1. Get project

Returns meta data of the project.

1.1. CURL sample

$ curl 'https://minerva-service.lcsb.uni.lu/minerva/api/projects/test_project/' -X GET \
    --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx"

1.2. Path Parameters

Table 1. /minerva/api/projects/{projectId}/
Parameter Description

projectId

project identifier

1.3. Response Fields

Path Type Description

projectId

String

project identifier

name

String

name

sharedInMinervaNet

Boolean

is the project shared in minerva net

defaultProject

Boolean

true if the project is defined as default in configuration

version

String

version

owner

String

login of the project creator

creationDate

String

when project was uploaded

disease

Reference

identifier of the disease

organism

Reference

identifier of the organism

directory

String

directory where files related to the project are located. Whole path looks like: /minerva/map_images/{directory}

status

String

status of the uploaded project; possible values: ANNOTATING, ARCHIVED, CACHING, CACHING_CHEMICAL, CACHING_DRUG, CACHING_MIRIAM, CACHING_MI_RNA, DONE, FAIL, GENERATING_IMAGES, PARSING_DATA, REMOVING, UNKNOWN, UPLOADING_TO_DB, VALIDATING_MIRIAM

progress

Number

how much current stage progressed in percent

notifyEmail

String

email address connected to the project

logEntries

Boolean

flag indicating that there are log entries attached to the project

license

License

license of this project

customLicenseName

String

if license is not provided this is the custom license name provided by user

customLicenseUrl

String

if license is not provided this is the custom license url provided by user

overviewImageViews

array<OverviewImage>

list of overview images

topOverviewImage

OverviewImage

overview image that should be used as top level image

1.4. Sample Response

{
  "version" : "1.0",
  "disease" : {
    "link" : null,
    "type" : "MESH_2012",
    "resource" : "D010300",
    "id" : 2146,
    "annotatorClassName" : ""
  },
  "organism" : {
    "link" : null,
    "type" : "TAXONOMY",
    "resource" : "9606",
    "id" : 2147,
    "annotatorClassName" : ""
  },
  "idObject" : 425,
  "status" : "uninitialized",
  "directory" : "289b78b436176091ad900020c933c544",
  "progress" : 0.0,
  "notifyEmail" : "minerva@uni.lu",
  "logEntries" : true,
  "name" : "Test Disease",
  "sharedInMinervaNet" : false,
  "defaultProject" : false,
  "owner" : "admin",
  "projectId" : "test_project",
  "creationDate" : "2025-04-24 11:24:22",
  "overviewImageViews" : [ {
    "idObject" : 354,
    "filename" : "289b78b436176091ad900020c933c544/image.png",
    "width" : 200,
    "height" : 100,
    "links" : [ {
      "idObject" : 1060,
      "polygon" : [ {
        "x" : 0.0,
        "y" : 0.0
      }, {
        "x" : 10.0,
        "y" : 10.0
      }, {
        "x" : 10.0,
        "y" : 0.0
      } ],
      "zoomLevel" : 2,
      "modelPoint" : {
        "x" : 10.0,
        "y" : 20.0
      },
      "modelLinkId" : 738,
      "type" : "OverviewModelLink"
    }, {
      "idObject" : 1061,
      "polygon" : [ {
        "x" : 0.0,
        "y" : 0.0
      }, {
        "x" : 10.0,
        "y" : 10.0
      }, {
        "x" : 10.0,
        "y" : 0.0
      } ],
      "imageLinkId" : 354,
      "type" : "OverviewImageLink"
    }, {
      "idObject" : 1062,
      "polygon" : [ {
        "x" : 0.0,
        "y" : 0.0
      }, {
        "x" : 10.0,
        "y" : 10.0
      }, {
        "x" : 10.0,
        "y" : 0.0
      } ],
      "query" : "a1",
      "type" : "OverviewSearchLink"
    } ]
  } ],
  "topOverviewImage" : {
    "idObject" : 354,
    "filename" : "289b78b436176091ad900020c933c544/image.png",
    "width" : 200,
    "height" : 100,
    "links" : [ {
      "idObject" : 1060,
      "polygon" : [ {
        "x" : 0.0,
        "y" : 0.0
      }, {
        "x" : 10.0,
        "y" : 10.0
      }, {
        "x" : 10.0,
        "y" : 0.0
      } ],
      "zoomLevel" : 2,
      "modelPoint" : {
        "x" : 10.0,
        "y" : 20.0
      },
      "modelLinkId" : 738,
      "type" : "OverviewModelLink"
    }, {
      "idObject" : 1061,
      "polygon" : [ {
        "x" : 0.0,
        "y" : 0.0
      }, {
        "x" : 10.0,
        "y" : 10.0
      }, {
        "x" : 10.0,
        "y" : 0.0
      } ],
      "imageLinkId" : 354,
      "type" : "OverviewImageLink"
    }, {
      "idObject" : 1062,
      "polygon" : [ {
        "x" : 0.0,
        "y" : 0.0
      }, {
        "x" : 10.0,
        "y" : 10.0
      }, {
        "x" : 10.0,
        "y" : 0.0
      } ],
      "query" : "a1",
      "type" : "OverviewSearchLink"
    } ]
  },
  "license" : {
    "id" : 2,
    "name" : "Creative Commons Attribution 4.0 International Public License",
    "content" : "\n<h3>Creative Commons Attribution 4.0 International Public License</h3>\n<p>By exercising the Licensed Rights (defined below), You accept and agree to be bound by the terms and conditions of this Creative Commons Attribution 4.0 International Public License (\"Public License\"). To the extent this Public License may be interpreted as a contract, You are granted the Licensed Rights in consideration of Your acceptance of these terms and conditions, and the Licensor grants You such rights in consideration of benefits the Licensor receives from making the Licensed Material available under these terms and conditions.</p>\n<p id=\"s1\"><strong>Section 1 – Definitions.</strong></p>\n<ol type=\"a\">\n<li id=\"s1a\"><strong>Adapted Material</strong> means material subject to Copyright and Similar Rights that is derived from or based upon the Licensed Material and in which the Licensed Material is translated, altered, arranged, transformed, or otherwise modified in a manner requiring permission under the Copyright and Similar Rights held by the Licensor. For purposes of this Public License, where the Licensed Material is a musical work, performance, or sound recording, Adapted Material is always produced where the Licensed Material is synched in timed relation with a moving image.</li>\n<li id=\"s1b\"><strong>Adapter's License</strong> means the license You apply to Your Copyright and Similar Rights in Your contributions to Adapted Material in accordance with the terms and conditions of this Public License.</li>\n<li id=\"s1c\"><strong>Copyright and Similar Rights</strong> means copyright and/or similar rights closely related to copyright including, without limitation, performance, broadcast, sound recording, and Sui Generis Database Rights, without regard to how the rights are labeled or categorized. For purposes of this Public License, the rights specified in Section <a href=\"#s2b\">2(b)(1)-(2)</a> are not Copyright and Similar Rights.</li>\n<li id=\"s1d\"><strong>Effective Technological Measures</strong> means those measures that, in the absence of proper authority, may not\nbe circumvented under laws fulfilling obligations under Article 11 of the WIPO Copyright Treaty adopted on December 20, 1996, and/or similar\ninternational agreements.</li>\n<li id=\"s1e\"><strong>Exceptions and Limitations</strong> means fair use, fair dealing, and/or any other exception or limitation to Copyright and Similar Rights that applies to Your use of the Licensed Material.</li>\n<li id=\"s1f\"><strong>Licensed Material</strong> means the artistic or literary work, database, or other material to which the Licensor applied this Public License.</li>\n<li id=\"s1g\"><strong>Licensed Rights</strong> means the rights granted to You subject to the terms and conditions of this Public License, which are limited to all Copyright and Similar Rights that apply to Your use of the Licensed Material and that the Licensor has authority to license.</li>\n<li id=\"s1h\"><strong>Licensor</strong> means the individual(s) or entity(ies) granting rights under this Public License.</li>\n<li id=\"s1i\"><strong>Share</strong> means to provide material to the public by any means or process that requires permission under the Licensed Rights, such as reproduction, public display, public performance, distribution, dissemination, communication, or importation, and to make material available to the public including in ways that members of the public may access the material from a place and at a time individually chosen by them.</li>\n<li id=\"s1j\"><strong>Sui Generis Database Rights</strong> means rights other than copyright resulting from Directive 96/9/EC of the European Parliament and of the Council of 11 March 1996 on the legal protection of databases, as amended and/or succeeded, as well as other essentially equivalent rights anywhere in the world.</li>\n<li id=\"s1k\"><strong>You</strong> means the individual or entity exercising the Licensed Rights under this Public License. <strong>Your</strong> has a corresponding meaning.</li>\n</ol>\n<p id=\"s2\"><strong>Section 2 – Scope.</strong></p>\n<ol type=\"a\">\n<li id=\"s2a\"><strong>License grant</strong>.\n<ol>\n<li id=\"s2a1\">Subject to the terms and conditions of this Public License, the Licensor hereby grants You a worldwide, royalty-free, non-sublicensable, non-exclusive, irrevocable license to exercise the Licensed Rights in the Licensed Material to:\n<ol type=\"A\">\n<li id=\"s2a1A\">reproduce and Share the Licensed Material, in whole or in part; and</li>\n<li id=\"s2a1B\">produce, reproduce, and Share Adapted Material.</li>\n</ol>\n</li><li id=\"s2a2\"><span style=\"text-decoration: underline;\">Exceptions and Limitations</span>. For the avoidance of doubt, where Exceptions and Limitations apply to Your use, this Public License does not apply, and You do not need to comply with its terms and conditions.</li>\n<li id=\"s2a3\"><span style=\"text-decoration: underline;\">Term</span>. The term of this Public License is specified in Section <a href=\"#s6a\">6(a)</a>.</li>\n<li id=\"s2a4\"><span style=\"text-decoration: underline;\">Media and formats; technical modifications allowed</span>. The Licensor authorizes You to exercise the Licensed Rights in all media and formats whether now known or hereafter created, and to make technical modifications necessary to do so. The Licensor waives and/or agrees not to assert any right or authority to forbid You from making technical modifications necessary to exercise the Licensed Rights, including technical modifications necessary to circumvent Effective Technological Measures. For purposes of this Public License, simply making modifications authorized by this Section <a href=\"#s2a4\">2(a)(4)</a> never produces Adapted Material.</li>\n<li id=\"s2a5\"><span style=\"text-decoration: underline;\">Downstream recipients</span>.\n<div class=\"para\">\n<ol type=\"A\">\n<li id=\"s2a5A\"><span style=\"text-decoration: underline;\">Offer from the Licensor – Licensed Material</span>. Every recipient of the Licensed Material automatically receives an offer from the Licensor to exercise the Licensed Rights under the terms and conditions of this Public License.</li>\n<li id=\"s2a5B\"><span style=\"text-decoration: underline;\">No downstream restrictions</span>. You may not offer or impose any additional or different terms or conditions on, or apply any Effective Technological Measures to, the Licensed Material if doing so restricts exercise of the Licensed Rights by any recipient of the Licensed Material.</li>\n</ol>\n</div>\n</li><li id=\"s2a6\"><span style=\"text-decoration: underline;\">No endorsement</span>. Nothing in this Public License constitutes or may be construed as permission to assert or imply that You are, or that Your use of the Licensed Material is, connected with, or sponsored, endorsed, or granted official status by, the Licensor or others designated to receive attribution as provided in Section <a href=\"#s3a1Ai\">3(a)(1)(A)(i)</a>.</li>\n</ol>\n</li><li id=\"s2b\"><p><strong>Other rights</strong>.</p>\n<ol>\n<li id=\"s2b1\">Moral rights, such as the right of integrity, are not licensed under this Public License, nor are publicity, privacy, and/or other similar personality rights; however, to the extent possible, the Licensor waives and/or agrees not to assert any such rights held by the Licensor to the limited extent necessary to allow You to exercise the Licensed Rights, but not otherwise.</li>\n<li id=\"s2b2\">Patent and trademark rights are not licensed under this Public License.</li>\n<li id=\"s2b3\">To the extent possible, the Licensor waives any right to collect royalties from You for the exercise of the Licensed Rights, whether directly or through a collecting society under any voluntary or waivable statutory or compulsory licensing scheme. In all other cases the Licensor expressly reserves any right to collect such royalties.</li>\n</ol>\n</li>\n</ol>\n<p id=\"s3\"><strong>Section 3 – License Conditions.</strong></p>\n<p>Your exercise of the Licensed Rights is expressly made subject to the following conditions.</p>\n<ol type=\"a\">\n<li id=\"s3a\"><p><strong>Attribution</strong>.</p>\n<ol>\n<li id=\"s3a1\"><p>If You Share the Licensed Material (including in modified form), You must:</p>\n<ol type=\"A\">\n<li id=\"s3a1A\">retain the following if it is supplied by the Licensor with the Licensed Material:\n<ol type=\"i\">\n<li id=\"s3a1Ai\">identification of the creator(s) of the Licensed Material and any others designated to receive attribution, in any reasonable manner requested by the Licensor (including by pseudonym if designated);</li>\n<li id=\"s3a1Aii\">a copyright notice;</li>\n<li id=\"s3a1Aiii\">a notice that refers to this Public License; </li>\n<li id=\"s3a1Aiv\">a notice that refers to the disclaimer of warranties;</li>\n<li id=\"s3a1Av\">a URI or hyperlink to the Licensed Material to the extent reasonably practicable;</li>\n</ol>\n</li><li id=\"s3a1B\">indicate if You modified the Licensed Material and retain an indication of any previous modifications; and</li>\n<li id=\"s3a1C\">indicate the Licensed Material is licensed under this Public License,\nand include the text of, or the URI or hyperlink to, this Public\nLicense.</li>\n</ol>\n</li>\n<li id=\"s3a2\">You may satisfy the conditions in Section <a href=\"#s3a1\">3(a)(1)</a> in any reasonable manner based on the medium, means, and context in which You Share the Licensed Material. For example, it may be reasonable to satisfy the conditions by providing a URI or hyperlink to a resource that includes the required information.</li>\n<li id=\"s3a3\">If requested by the Licensor, You must remove any of the information required by Section <a href=\"#s3a1A\">3(a)(1)(A)</a> to the extent reasonably practicable.</li>\n<li id=\"s3a4\">If You Share Adapted Material You produce, the Adapter's License You apply must not prevent recipients of the Adapted Material from complying with this Public License.</li>\n</ol>\n</li>\n</ol>\n<p id=\"s4\"><strong>Section 4 – Sui Generis Database Rights.</strong></p>\n<p>Where the Licensed Rights include Sui Generis Database Rights that apply to Your use of the Licensed Material:</p>\n<ol type=\"a\">\n<li id=\"s4a\">for the avoidance of doubt, Section <a href=\"#s2a1\">2(a)(1)</a> grants You the right to extract, reuse, reproduce, and Share all or a substantial portion of the contents of the database;</li>\n<li id=\"s4b\">if You include all or a substantial portion of the database contents in a database in which You have Sui Generis Database Rights, then the database in which You have Sui Generis Database Rights (but not its individual contents) is Adapted Material; and</li>\n<li id=\"s4c\">You must comply with the conditions in Section <a href=\"#s3a\">3(a)</a> if You Share all or a substantial portion of the contents of the database.</li>\n</ol>\nFor the avoidance of doubt, this Section\n<a href=\"#s4\">4</a>\n supplements and does not replace Your obligations under this Public License where the Licensed Rights include other Copyright and Similar Rights.\n<p id=\"s5\"><strong>Section 5 – Disclaimer of Warranties and Limitation of Liability.</strong></p>\n<ol style=\"font-weight: bold;\" type=\"a\">\n<li id=\"s5a\"><strong>Unless otherwise separately undertaken by the Licensor, to the extent possible, the Licensor offers the Licensed Material as-is and as-available, and makes no representations or warranties of any kind concerning the Licensed Material, whether express, implied, statutory, or other. This includes, without limitation, warranties of title, merchantability, fitness for a particular purpose, non-infringement, absence of latent or other defects, accuracy, or the presence or absence of errors, whether or not known or discoverable. Where disclaimers of warranties are not allowed in full or in part, this disclaimer may not apply to You.</strong></li>\n<li id=\"s5b\"><strong>To the extent possible, in no event will the Licensor be liable to You on any legal theory (including, without limitation, negligence) or otherwise for any direct, special, indirect, incidental, consequential, punitive, exemplary, or other losses, costs, expenses, or damages arising out of this Public License or use of the Licensed Material, even if the Licensor has been advised of the possibility of such losses, costs, expenses, or damages. Where a limitation of liability is not allowed in full or in part, this limitation may not apply to You.</strong></li>\n</ol>\n<ol start=\"3\" type=\"a\">\n<li id=\"s5c\">The disclaimer of warranties and limitation of liability provided above shall be interpreted in a manner that, to the extent possible, most closely approximates an absolute disclaimer and waiver of all liability.</li>\n</ol>\n<p id=\"s6\"><strong>Section 6 – Term and Termination.</strong></p>\n<ol type=\"a\">\n<li id=\"s6a\">This Public License applies for the term of the Copyright and Similar Rights licensed here. However, if You fail to comply with this Public License, then Your rights under this Public License terminate automatically.</li>\n<li id=\"s6b\">\n<p>Where Your right to use the Licensed Material has terminated under Section <a href=\"#s6a\">6(a)</a>, it reinstates:</p>\n<ol>\n<li id=\"s6b1\">automatically as of the date the violation is cured, provided it is cured within 30 days of Your discovery of the violation; or</li>\n<li id=\"s6b2\">upon express reinstatement by the Licensor.</li>\n</ol>\nFor the avoidance of doubt, this Section <a href=\"#s6b\">6(b)</a> does not affect any right the Licensor may have to seek remedies for Your violations of this Public License.</li>\n<li id=\"s6c\">For the avoidance of doubt, the Licensor may also offer the Licensed Material under separate terms or conditions or stop distributing the Licensed Material at any time; however, doing so will not terminate this Public License.</li>\n<li id=\"s6d\">Sections <a href=\"#s1\">1</a>, <a href=\"#s5\">5</a>, <a href=\"#s6\">6</a>, <a href=\"#s7\">7</a>, and <a href=\"#s8\">8</a> survive termination of this Public License.</li>\n</ol>\n<p id=\"s7\"><strong>Section 7 – Other Terms and Conditions.</strong></p>\n<ol type=\"a\">\n<li id=\"s7a\">The Licensor shall not be bound by any additional or different terms or conditions communicated by You unless expressly agreed.</li>\n<li id=\"s7b\">Any arrangements, understandings, or agreements regarding the Licensed Material not stated herein are separate from and independent of the terms and conditions of this Public License.</li>\n</ol>\n<p id=\"s8\"><strong>Section 8 – Interpretation.</strong></p>\n<ol type=\"a\">\n<li id=\"s8a\">For the avoidance of doubt, this Public License does not, and shall not be interpreted to, reduce, limit, restrict, or impose conditions on any use of the Licensed Material that could lawfully be made without permission under this Public License.</li>\n<li id=\"s8b\">To the extent possible, if any provision of this Public License is deemed unenforceable, it shall be automatically reformed to the minimum extent necessary to make it enforceable. If the provision cannot be reformed, it shall be severed from this Public License without affecting the enforceability of the remaining terms and conditions.</li>\n<li id=\"s8c\">No term or condition of this Public License will be waived and no failure to comply consented to unless expressly agreed to by the Licensor.</li>\n<li id=\"s8d\">Nothing in this Public License constitutes or may be interpreted as a limitation upon, or waiver of, any privileges and immunities that apply to the Licensor or You, including from the legal processes of any jurisdiction or authority.</li>\n</ol>",
    "url" : "https://creativecommons.org/licenses/by/4.0/"
  },
  "customLicenseName" : "",
  "customLicenseUrl" : ""
}

2. List

List all projects.

2.1. CURL sample

$ curl 'https://minerva-service.lcsb.uni.lu/minerva/api/projects/' -X GET \
    --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx"

2.2. Response Fields

Path Type Description

[]

Array

list of projects

2.3. Sample Response

[ {
  "version" : "empty DISEASE MAP",
  "disease" : null,
  "organism" : null,
  "idObject" : 4,
  "status" : "Ok",
  "directory" : "02048220983372830390706000085009",
  "progress" : 100.0,
  "notifyEmail" : "",
  "logEntries" : false,
  "name" : "",
  "sharedInMinervaNet" : false,
  "defaultProject" : true,
  "owner" : "anonymous",
  "projectId" : "empty",
  "creationDate" : "2014-03-27 15:59:31",
  "overviewImageViews" : [ ],
  "topOverviewImage" : null,
  "license" : null,
  "customLicenseName" : "",
  "customLicenseUrl" : ""
} ]

3. Create project

Creates project from file that is already uploaded to minerva.

3.1. Path Parameters

Table 2. /minerva/api/projects/{projectId}/
Parameter Description

projectId

project identifier

3.2. Request Parameters

Parameter Description

projectId

project identifier

file-id

identifier of the file that should be used to create project

license-id

identifier of the license for project

custom-license-name

if custom licensing is used, it’s a name of the license

custom-license-url

if custom licensing is used, it’s an url of the license

parser

class of the parser that should be used for parsing the file. Available options: lcsb.mapviewer.converter.model.celldesigner.CellDesignerXmlParser, lcsb.mapviewer.converter.model.sbgnml.SbgnmlXmlConverter, lcsb.mapviewer.converter.model.sbml.SbmlParser, lcsb.mapviewer.wikipathway.GpmlParser

cache

should the data from external sources be cached after project was created

description

description of the project

notify-email

email address that should be when something change in the project

disease

disease associated with the project (final MESH id)

name

name of the project

organism

organism associated with the project (final TAXONOMY id)

sbgn

should the map be visualized in sbgn-like way

semantic-zooming-contains-multiple-overlays

display each semantic zoom level in separate overlay

version

version of the project

annotate

should the project be automatically annotated

verify-annotations

should the annotations be verified

zip-entries

array of parameters describing each file in the zipped input file, file-index is number starting from 0

zip-entries[{number}][_filename]

name of the file

zip-entries[{number}][_type]

type of the file. Possible values: GLYPH, IMAGE, MAP, OVERLAY

zip-entries[{number}][_data][name]

name of the map/name of the overlay

zip-entries[{number}][_data][mapping]

for submaps - is this map a mapping file (true/false)

zip-entries[{number}][_data][root]

for submaps - is this map a root map (true/false)

zip-entries[{number}][_data][type][id]

for submaps defines type of the connection. Possible values: DOWNSTREAM_TARGETS, PATHWAY, UNKNOWN

zip-entries[{number}][_data][description]

for overlays - description of the overlay

3.3. Example 1.

Upload of project from simple file

3.3.1. CURL sample

$ curl 'https://minerva-service.lcsb.uni.lu/minerva/api/projects/test_project/' -X POST \
    -d 'projectId=test_project&name=New+Disease+Map&file-id=524&license-id=1&cache=false&description=this+is+my+awesome+project&notify-email=notify.me%40uni.lu&disease=D010300&organism=9606&sbgn=false&version=0.0.1&annotate=false&verify-annotations=false&custom-license-name=my+awesome+license&custom-license-url=https%3A%2F%2Fmy.awesome.lincese.org%2F&parser=lcsb.mapviewer.converter.model.celldesigner.CellDesignerXmlParser' \
    --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx" \
    -H 'Content-Type: application/x-www-form-urlencoded'

3.3.2. Sample Response

{
  "version" : "0.0.1",
  "disease" : {
    "link" : null,
    "type" : "MESH_2012",
    "resource" : "D010300",
    "id" : 2239,
    "annotatorClassName" : ""
  },
  "organism" : {
    "link" : null,
    "type" : "TAXONOMY",
    "resource" : "9606",
    "id" : 2240,
    "annotatorClassName" : ""
  },
  "idObject" : 464,
  "status" : "uninitialized",
  "directory" : "04670109200001990305111050130044",
  "progress" : 0.0,
  "notifyEmail" : "notify.me@uni.lu",
  "logEntries" : false,
  "name" : "New Disease Map",
  "sharedInMinervaNet" : false,
  "defaultProject" : false,
  "owner" : "admin",
  "projectId" : "test_project",
  "creationDate" : "2025-04-24 11:24:45",
  "overviewImageViews" : [ ],
  "topOverviewImage" : null,
  "license" : {
    "id" : 1,
    "name" : "CC0 1.0 Universal",
    "content" : "\n<h3><em>Statement of Purpose</em></h3>\n<p>The laws of most jurisdictions throughout the world\nautomatically confer exclusive Copyright and Related Rights\n(defined below) upon the creator and subsequent owner(s) (each\nand all, an \"owner\") of an original work of authorship and/or\na database (each, a \"Work\").</p>\n<p>Certain owners wish to permanently relinquish those rights\nto a Work for the purpose of contributing to a commons of\ncreative, cultural and scientific works (\"Commons\") that the\npublic can reliably and without fear of later claims of\ninfringement build upon, modify, incorporate in other works,\nreuse and redistribute as freely as possible in any form\nwhatsoever and for any purposes, including without limitation\ncommercial purposes. These owners may contribute to the\nCommons to promote the ideal of a free culture and the further\nproduction of creative, cultural and scientific works, or to\ngain reputation or greater distribution for their Work in part\nthrough the use and efforts of others.</p>\n<p>For these and/or other purposes and motivations, and\nwithout any expectation of additional consideration or\ncompensation, the person associating CC0 with a Work (the\n\"Affirmer\"), to the extent that he or she is an owner of\nCopyright and Related Rights in the Work, voluntarily elects\nto apply CC0 to the Work and publicly distribute the Work\nunder its terms, with knowledge of his or her Copyright and\nRelated Rights in the Work and the meaning and intended legal\neffect of CC0 on those rights.</p>\n<p><strong>1. Copyright and Related Rights.</strong>\nA Work made available under CC0 may be protected by\ncopyright and related or neighboring rights (\"Copyright and\nRelated Rights\"). Copyright and Related Rights include, but\nare not limited to, the following:\n</p>\n<ol type=\"i\">\n<li>the right to reproduce, adapt, distribute, perform,\ndisplay, communicate, and translate a Work;</li>\n<li> moral rights retained by the original author(s) and/or\nperformer(s);</li>\n<li>publicity and privacy rights pertaining to a person's\nimage or likeness depicted in a Work;</li>\n<li>rights protecting against unfair competition in regards\nto a Work, subject to the limitations in paragraph 4(a),\nbelow;</li>\n<li>rights protecting the extraction, dissemination, use and\nreuse of data in a Work;</li>\n<li>database rights (such as those arising under Directive\n96/9/EC of the European Parliament and of the Council of 11\nMarch 1996 on the legal protection of databases, and under\nany national implementation thereof, including any amended\nor successor version of such directive); and</li>\n<li>other similar, equivalent or corresponding rights\nthroughout the world based on applicable law or treaty, and\nany national implementations thereof.</li>\n</ol>\n<p><strong>2. Waiver.</strong> To the greatest extent\npermitted by, but not in contravention of, applicable law,\nAffirmer hereby overtly, fully, permanently, irrevocably and\nunconditionally waives, abandons, and surrenders all of\nAffirmer's Copyright and Related Rights and associated claims\nand causes of action, whether now known or unknown (including\nexisting as well as future claims and causes of action), in\nthe Work (i) in all territories worldwide, (ii) for the\nmaximum duration provided by applicable law or treaty\n(including future time extensions), (iii) in any current or\nfuture medium and for any number of copies, and (iv) for any\npurpose whatsoever, including without limitation commercial,\nadvertising or promotional purposes (the \"Waiver\"). Affirmer\nmakes the Waiver for the benefit of each member of the public\nat large and to the detriment of Affirmer's heirs and\nsuccessors, fully intending that such Waiver shall not be\nsubject to revocation, rescission, cancellation, termination,\nor any other legal or equitable action to disrupt the quiet\nenjoyment of the Work by the public as contemplated by\nAffirmer's express Statement of Purpose.\n</p>\n<p><strong>3. Public License Fallback.</strong> Should any\npart of the Waiver for any reason be judged legally invalid or\nineffective under applicable law, then the Waiver shall be\npreserved to the maximum extent permitted taking into account\nAffirmer's express Statement of Purpose. In addition, to the\nextent the Waiver is so judged Affirmer hereby grants to each\naffected person a royalty-free, non transferable, non\nsublicensable, non exclusive, irrevocable and unconditional\nlicense to exercise Affirmer's Copyright and Related Rights\nin the Work (i) in all territories worldwide, (ii) for the\nmaximum duration provided by applicable law or treaty\n(including future time extensions), (iii) in any current or\nfuture medium and for any number of copies, and (iv) for any\npurpose whatsoever, including without limitation commercial,\nadvertising or promotional purposes (the \"License\"). The\nLicense shall be deemed effective as of the date CC0 was\napplied by Affirmer to the Work. Should any part of the\nLicense for any reason be judged legally invalid or\nineffective under applicable law, such partial invalidity or\nineffectiveness shall not invalidate the remainder of the\nLicense, and in such case Affirmer hereby affirms that he or\nshe will not (i) exercise any of his or her remaining\nCopyright and Related Rights in the Work or (ii) assert any\nassociated claims and causes of action with respect to the\nWork, in either case contrary to Affirmer's express Statement\nof Purpose.</p>\n<p><strong>4. Limitations and Disclaimers.</strong></p>\n<ol type=\"a\">\n<li>No trademark or patent rights held by Affirmer are\nwaived, abandoned, surrendered, licensed or otherwise\naffected by this document.</li>\n<li>Affirmer offers the Work as-is and makes no\nrepresentations or warranties of any kind concerning the\nWork, express, implied, statutory or otherwise, including\nwithout limitation warranties of title, merchantability,\nfitness for a particular purpose, non infringement, or the\nabsence of latent or other defects, accuracy, or the present\nor absence of errors, whether or not discoverable, all to\nthe greatest extent permissible under applicable law.</li>\n<li>Affirmer disclaims responsibility for clearing rights of\nother persons that may apply to the Work or any use thereof,\nincluding without limitation any person's Copyright and\nRelated Rights in the Work. Further, Affirmer disclaims\nresponsibility for obtaining any necessary consents,\npermissions or other rights required for any use of the\nWork.</li>\n<li>Affirmer understands and acknowledges that Creative\nCommons is not a party to this document and has no duty or\nobligation with respect to this CC0 or use of the Work.</li>\n</ol>\n",
    "url" : "https://creativecommons.org/publicdomain/zero/1.0/"
  },
  "customLicenseName" : "my awesome license",
  "customLicenseUrl" : "https://my.awesome.lincese.org/"
}

3.4. Example 2.

Upload of project from complex zip file

3.4.1. CURL sample

$ curl 'https://minerva-service.lcsb.uni.lu/minerva/api/projects/test_project/' -X POST \
    -d 'projectId=test_project&file-id=525&name=Project+name&version=0.0.1&notify-email=minerva%40uni.lu&custom-license-name=my+awesome+license&custom-license-url=https%3A%2F%2Fmy.awesome.lincese.org%2F&parser=lcsb.mapviewer.converter.model.celldesigner.CellDesignerXmlParser&zip-entries%5B0%5D%5B_type%5D=MAP&zip-entries%5B0%5D%5B_filename%5D=main.xml&zip-entries%5B0%5D%5B_data%5D%5Broot%5D=true&zip-entries%5B0%5D%5B_data%5D%5Bname%5D=main&zip-entries%5B0%5D%5B_data%5D%5Btype%5D%5Bid%5D=UNKNOWN&zip-entries%5B1%5D%5B_type%5D=MAP&zip-entries%5B1%5D%5B_filename%5D=submaps%2Fmapping.xml&zip-entries%5B1%5D%5B_data%5D%5Broot%5D=false&zip-entries%5B1%5D%5B_data%5D%5Bname%5D=mapping&zip-entries%5B1%5D%5B_data%5D%5Btype%5D%5Bid%5D=UNKNOWN&zip-entries%5B2%5D%5B_type%5D=MAP&zip-entries%5B2%5D%5B_filename%5D=submaps%2Fs1.xml&zip-entries%5B2%5D%5B_data%5D%5Broot%5D=false&zip-entries%5B2%5D%5B_data%5D%5Bname%5D=s1&zip-entries%5B2%5D%5B_data%5D%5Btype%5D%5Bid%5D=UNKNOWN&zip-entries%5B3%5D%5B_type%5D=MAP&zip-entries%5B3%5D%5B_filename%5D=submaps%2Fs2.xml&zip-entries%5B3%5D%5B_data%5D%5Broot%5D=false&zip-entries%5B3%5D%5B_data%5D%5Bname%5D=s2&zip-entries%5B3%5D%5B_data%5D%5Btype%5D%5Bid%5D=UNKNOWN&zip-entries%5B4%5D%5B_type%5D=MAP&zip-entries%5B4%5D%5B_filename%5D=submaps%2Fs3.xml&zip-entries%5B4%5D%5B_data%5D%5Broot%5D=false&zip-entries%5B4%5D%5B_data%5D%5Bname%5D=s3&zip-entries%5B4%5D%5B_data%5D%5Btype%5D%5Bid%5D=UNKNOWN' \
    --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx" \
    -H 'Content-Type: application/x-www-form-urlencoded'

3.4.2. Sample Response

{
  "version" : "0.0.1",
  "disease" : null,
  "organism" : null,
  "idObject" : 467,
  "status" : "uninitialized",
  "directory" : "83308670977020498006004510608006",
  "progress" : 0.0,
  "notifyEmail" : "minerva@uni.lu",
  "logEntries" : false,
  "name" : "Project name",
  "sharedInMinervaNet" : false,
  "defaultProject" : false,
  "owner" : "admin",
  "projectId" : "test_project",
  "creationDate" : "2025-04-24 11:24:46",
  "overviewImageViews" : [ ],
  "topOverviewImage" : null,
  "license" : null,
  "customLicenseName" : "my awesome license",
  "customLicenseUrl" : "https://my.awesome.lincese.org/"
}

4. Update project

Updates project.

4.1. Path Parameters

Table 3. /minerva/api/projects/{projectId}/
Parameter Description

projectId

project identifier

4.2. Request Fields

Path Type Description

project.version

String

version of the project

project.name

String

name of the project

project.license.id

Number

license id

project.notifyEmail

String

email address that should be when something change in the project

project.organism

Object

organism associated with the project

project.disease

Object

disease associated with the project

4.3. CURL sample

$ curl 'https://minerva-service.lcsb.uni.lu/minerva/api/projects/test_project/' -X PATCH \
    -d '{"project":{"version":"xxx", "name": "new name", "notifyEmail": "notify@uni.lu", "organism": {"type": "TAXONOMY", "resource": "9605"}, "disease": {"type": "MESH_2012", "resource": "D010300"}, "license": {"id": 1} }}' \
    --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx" \
    -H 'Content-Type: application/json'

4.4. Sample Response

{
  "version" : "xxx",
  "disease" : {
    "link" : null,
    "type" : "MESH_2012",
    "resource" : "D010300",
    "id" : 2188,
    "annotatorClassName" : ""
  },
  "organism" : {
    "link" : null,
    "type" : "TAXONOMY",
    "resource" : "9605",
    "id" : 2189,
    "annotatorClassName" : ""
  },
  "idObject" : 445,
  "status" : "uninitialized",
  "directory" : "289b78b436176091ad900020c933c544",
  "progress" : 0.0,
  "notifyEmail" : "notify@uni.lu",
  "logEntries" : true,
  "name" : "new name",
  "sharedInMinervaNet" : false,
  "defaultProject" : false,
  "owner" : "admin",
  "projectId" : "test_project",
  "creationDate" : "2025-04-24 11:24:32",
  "overviewImageViews" : [ {
    "idObject" : 361,
    "filename" : "289b78b436176091ad900020c933c544/image.png",
    "width" : 200,
    "height" : 100,
    "links" : [ {
      "idObject" : 1081,
      "polygon" : [ {
        "x" : 0.0,
        "y" : 0.0
      }, {
        "x" : 10.0,
        "y" : 10.0
      }, {
        "x" : 10.0,
        "y" : 0.0
      } ],
      "zoomLevel" : 2,
      "modelPoint" : {
        "x" : 10.0,
        "y" : 20.0
      },
      "modelLinkId" : 756,
      "type" : "OverviewModelLink"
    }, {
      "idObject" : 1082,
      "polygon" : [ {
        "x" : 0.0,
        "y" : 0.0
      }, {
        "x" : 10.0,
        "y" : 10.0
      }, {
        "x" : 10.0,
        "y" : 0.0
      } ],
      "imageLinkId" : 361,
      "type" : "OverviewImageLink"
    }, {
      "idObject" : 1083,
      "polygon" : [ {
        "x" : 0.0,
        "y" : 0.0
      }, {
        "x" : 10.0,
        "y" : 10.0
      }, {
        "x" : 10.0,
        "y" : 0.0
      } ],
      "query" : "a1",
      "type" : "OverviewSearchLink"
    } ]
  } ],
  "topOverviewImage" : {
    "idObject" : 361,
    "filename" : "289b78b436176091ad900020c933c544/image.png",
    "width" : 200,
    "height" : 100,
    "links" : [ {
      "idObject" : 1081,
      "polygon" : [ {
        "x" : 0.0,
        "y" : 0.0
      }, {
        "x" : 10.0,
        "y" : 10.0
      }, {
        "x" : 10.0,
        "y" : 0.0
      } ],
      "zoomLevel" : 2,
      "modelPoint" : {
        "x" : 10.0,
        "y" : 20.0
      },
      "modelLinkId" : 756,
      "type" : "OverviewModelLink"
    }, {
      "idObject" : 1082,
      "polygon" : [ {
        "x" : 0.0,
        "y" : 0.0
      }, {
        "x" : 10.0,
        "y" : 10.0
      }, {
        "x" : 10.0,
        "y" : 0.0
      } ],
      "imageLinkId" : 361,
      "type" : "OverviewImageLink"
    }, {
      "idObject" : 1083,
      "polygon" : [ {
        "x" : 0.0,
        "y" : 0.0
      }, {
        "x" : 10.0,
        "y" : 10.0
      }, {
        "x" : 10.0,
        "y" : 0.0
      } ],
      "query" : "a1",
      "type" : "OverviewSearchLink"
    } ]
  },
  "license" : {
    "id" : 1,
    "name" : "CC0 1.0 Universal",
    "content" : "\n<h3><em>Statement of Purpose</em></h3>\n<p>The laws of most jurisdictions throughout the world\nautomatically confer exclusive Copyright and Related Rights\n(defined below) upon the creator and subsequent owner(s) (each\nand all, an \"owner\") of an original work of authorship and/or\na database (each, a \"Work\").</p>\n<p>Certain owners wish to permanently relinquish those rights\nto a Work for the purpose of contributing to a commons of\ncreative, cultural and scientific works (\"Commons\") that the\npublic can reliably and without fear of later claims of\ninfringement build upon, modify, incorporate in other works,\nreuse and redistribute as freely as possible in any form\nwhatsoever and for any purposes, including without limitation\ncommercial purposes. These owners may contribute to the\nCommons to promote the ideal of a free culture and the further\nproduction of creative, cultural and scientific works, or to\ngain reputation or greater distribution for their Work in part\nthrough the use and efforts of others.</p>\n<p>For these and/or other purposes and motivations, and\nwithout any expectation of additional consideration or\ncompensation, the person associating CC0 with a Work (the\n\"Affirmer\"), to the extent that he or she is an owner of\nCopyright and Related Rights in the Work, voluntarily elects\nto apply CC0 to the Work and publicly distribute the Work\nunder its terms, with knowledge of his or her Copyright and\nRelated Rights in the Work and the meaning and intended legal\neffect of CC0 on those rights.</p>\n<p><strong>1. Copyright and Related Rights.</strong>\nA Work made available under CC0 may be protected by\ncopyright and related or neighboring rights (\"Copyright and\nRelated Rights\"). Copyright and Related Rights include, but\nare not limited to, the following:\n</p>\n<ol type=\"i\">\n<li>the right to reproduce, adapt, distribute, perform,\ndisplay, communicate, and translate a Work;</li>\n<li> moral rights retained by the original author(s) and/or\nperformer(s);</li>\n<li>publicity and privacy rights pertaining to a person's\nimage or likeness depicted in a Work;</li>\n<li>rights protecting against unfair competition in regards\nto a Work, subject to the limitations in paragraph 4(a),\nbelow;</li>\n<li>rights protecting the extraction, dissemination, use and\nreuse of data in a Work;</li>\n<li>database rights (such as those arising under Directive\n96/9/EC of the European Parliament and of the Council of 11\nMarch 1996 on the legal protection of databases, and under\nany national implementation thereof, including any amended\nor successor version of such directive); and</li>\n<li>other similar, equivalent or corresponding rights\nthroughout the world based on applicable law or treaty, and\nany national implementations thereof.</li>\n</ol>\n<p><strong>2. Waiver.</strong> To the greatest extent\npermitted by, but not in contravention of, applicable law,\nAffirmer hereby overtly, fully, permanently, irrevocably and\nunconditionally waives, abandons, and surrenders all of\nAffirmer's Copyright and Related Rights and associated claims\nand causes of action, whether now known or unknown (including\nexisting as well as future claims and causes of action), in\nthe Work (i) in all territories worldwide, (ii) for the\nmaximum duration provided by applicable law or treaty\n(including future time extensions), (iii) in any current or\nfuture medium and for any number of copies, and (iv) for any\npurpose whatsoever, including without limitation commercial,\nadvertising or promotional purposes (the \"Waiver\"). Affirmer\nmakes the Waiver for the benefit of each member of the public\nat large and to the detriment of Affirmer's heirs and\nsuccessors, fully intending that such Waiver shall not be\nsubject to revocation, rescission, cancellation, termination,\nor any other legal or equitable action to disrupt the quiet\nenjoyment of the Work by the public as contemplated by\nAffirmer's express Statement of Purpose.\n</p>\n<p><strong>3. Public License Fallback.</strong> Should any\npart of the Waiver for any reason be judged legally invalid or\nineffective under applicable law, then the Waiver shall be\npreserved to the maximum extent permitted taking into account\nAffirmer's express Statement of Purpose. In addition, to the\nextent the Waiver is so judged Affirmer hereby grants to each\naffected person a royalty-free, non transferable, non\nsublicensable, non exclusive, irrevocable and unconditional\nlicense to exercise Affirmer's Copyright and Related Rights\nin the Work (i) in all territories worldwide, (ii) for the\nmaximum duration provided by applicable law or treaty\n(including future time extensions), (iii) in any current or\nfuture medium and for any number of copies, and (iv) for any\npurpose whatsoever, including without limitation commercial,\nadvertising or promotional purposes (the \"License\"). The\nLicense shall be deemed effective as of the date CC0 was\napplied by Affirmer to the Work. Should any part of the\nLicense for any reason be judged legally invalid or\nineffective under applicable law, such partial invalidity or\nineffectiveness shall not invalidate the remainder of the\nLicense, and in such case Affirmer hereby affirms that he or\nshe will not (i) exercise any of his or her remaining\nCopyright and Related Rights in the Work or (ii) assert any\nassociated claims and causes of action with respect to the\nWork, in either case contrary to Affirmer's express Statement\nof Purpose.</p>\n<p><strong>4. Limitations and Disclaimers.</strong></p>\n<ol type=\"a\">\n<li>No trademark or patent rights held by Affirmer are\nwaived, abandoned, surrendered, licensed or otherwise\naffected by this document.</li>\n<li>Affirmer offers the Work as-is and makes no\nrepresentations or warranties of any kind concerning the\nWork, express, implied, statutory or otherwise, including\nwithout limitation warranties of title, merchantability,\nfitness for a particular purpose, non infringement, or the\nabsence of latent or other defects, accuracy, or the present\nor absence of errors, whether or not discoverable, all to\nthe greatest extent permissible under applicable law.</li>\n<li>Affirmer disclaims responsibility for clearing rights of\nother persons that may apply to the Work or any use thereof,\nincluding without limitation any person's Copyright and\nRelated Rights in the Work. Further, Affirmer disclaims\nresponsibility for obtaining any necessary consents,\npermissions or other rights required for any use of the\nWork.</li>\n<li>Affirmer understands and acknowledges that Creative\nCommons is not a party to this document and has no duty or\nobligation with respect to this CC0 or use of the Work.</li>\n</ol>\n",
    "url" : "https://creativecommons.org/publicdomain/zero/1.0/"
  },
  "customLicenseName" : "",
  "customLicenseUrl" : ""
}

5. Delete project

5.1. Path Parameters

Table 4. /minerva/api/projects/{projectId}/
Parameter Description

projectId

project identifier

5.2. CURL sample

$ curl 'https://minerva-service.lcsb.uni.lu/minerva/api/projects/test_project2/' -X DELETE \
    --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx"

5.3. Sample Response

{
  "version" : "0.0.1",
  "disease" : null,
  "organism" : null,
  "idObject" : 444,
  "status" : "Ok",
  "directory" : "58094804609036553003095944000000",
  "progress" : 100.0,
  "notifyEmail" : "minerva@uni.lu",
  "logEntries" : false,
  "name" : "Project name",
  "sharedInMinervaNet" : false,
  "defaultProject" : false,
  "owner" : "admin",
  "projectId" : "test_project2",
  "creationDate" : "2025-04-24 11:24:30",
  "overviewImageViews" : [ ],
  "topOverviewImage" : null,
  "license" : null,
  "customLicenseName" : "my awesome license",
  "customLicenseUrl" : "https://my.awesome.lincese.org/"
}

6. Get source

Gets source file used to create the project.

6.1. Path Parameters

Table 5. /minerva/api/projects/{projectId}:downloadSource
Parameter Description

projectId

project identifier

6.2. CURL sample

$ curl 'https://minerva-service.lcsb.uni.lu/minerva/api/projects/test_project:downloadSource' -X GET \
    --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx"

6.3. Sample Response

<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level2/version4"
      xmlns:celldesigner="http://www.sbml.org/2001/ns/celldesigner"
      level="2"
      version="4">
   <model metaid="untitled" id="untitled">
      <annotation>
         <celldesigner:extension>
            <celldesigner:modelVersion>4.0</celldesigner:modelVersion>
            <celldesigner:modelDisplay sizeX="600" sizeY="400"/>
            <celldesigner:listOfCompartmentAliases/>
            <celldesigner:listOfComplexSpeciesAliases/>
            <celldesigner:listOfSpeciesAliases>
               <celldesigner:speciesAlias id="sa1" species="s1">
                  <celldesigner:activity>inactive</celldesigner:activity>
                  <celldesigner:bounds x="141.0" y="110.0" w="80.0" h="40.0"/>
                  <celldesigner:font size="12"/>
                  <celldesigner:view state="usual"/>
                  <celldesigner:usualView>
                     <celldesigner:innerPosition x="0.0" y="0.0"/>
                     <celldesigner:boxSize width="80.0" height="40.0"/>
                     <celldesigner:singleLine width="1.0"/>
                     <celldesigner:paint color="ffccffcc" scheme="Color"/>
                  </celldesigner:usualView>
                  <celldesigner:briefView>
                     <celldesigner:innerPosition x="0.0" y="0.0"/>
                     <celldesigner:boxSize width="80.0" height="60.0"/>
                     <celldesigner:singleLine width="0.0"/>
                     <celldesigner:paint color="3fff0000" scheme="Color"/>
                  </celldesigner:briefView>
                  <celldesigner:info state="empty" angle="-1.5707963267948966"/>
               </celldesigner:speciesAlias>
            </celldesigner:listOfSpeciesAliases>
            <celldesigner:listOfGroups/>
            <celldesigner:listOfProteins>
               <celldesigner:protein id="pr1" name="generic protein" type="GENERIC"/>
            </celldesigner:listOfProteins>
            <celldesigner:listOfGenes/>
            <celldesigner:listOfRNAs/>
            <celldesigner:listOfAntisenseRNAs/>
            <celldesigner:listOfLayers/>
            <celldesigner:listOfBlockDiagrams/>
         </celldesigner:extension>
      </annotation>
      <listOfUnitDefinitions>
         <unitDefinition metaid="substance" id="substance" name="substance">
            <listOfUnits>
               <unit metaid="CDMT00001" kind="mole"/>
            </listOfUnits>
         </unitDefinition>
         <unitDefinition metaid="volume" id="volume" name="volume">
            <listOfUnits>
               <unit metaid="CDMT00002" kind="litre"/>
            </listOfUnits>
         </unitDefinition>
         <unitDefinition metaid="area" id="area" name="area">
            <listOfUnits>
               <unit metaid="CDMT00003" kind="metre" exponent="2"/>
            </listOfUnits>
         </unitDefinition>
         <unitDefinition metaid="length" id="length" name="length">
            <listOfUnits>
               <unit metaid="CDMT00004" kind="metre"/>
            </listOfUnits>
         </unitDefinition>
         <unitDefinition metaid="time" id="time" name="time">
            <listOfUnits>
               <unit metaid="CDMT00005" kind="second"/>
            </listOfUnits>
         </unitDefinition>
      </listOfUnitDefinitions>
      <listOfCompartments>
         <compartment metaid="default" id="default" size="1" units="volume"/>
      </listOfCompartments>
      <listOfSpecies>
         <species metaid="s1"
                  id="s1"
                  name="generic protein"
                  compartment="default"
                  initialAmount="0">
            <annotation>
               <celldesigner:extension>
                  <celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
                  <celldesigner:speciesIdentity>
                     <celldesigner:class>PROTEIN</celldesigner:class>
                     <celldesigner:proteinReference>pr1</celldesigner:proteinReference>
                  </celldesigner:speciesIdentity>
               </celldesigner:extension>
            </annotation>
         </species>
      </listOfSpecies>
   </model>
</sbml>

7. Get logs

Gets logs generated on project upload.

7.1. Path Parameters

Table 6. /minerva/api/projects/{projectId}/logs/
Parameter Description

projectId

project identifier

7.2. Request Parameters

Parameter Description

start

number of first entry in this response

sortColumn

log entry column that should be used for sorting (default: id)

sortOrder

log entry sort order (asc, desc)

level

level of log entry (warning, error)

length

number of log entries we want to obtain

search

search query used for filtering

7.3. Response Fields

Path Type Description

data

Array

list of log entries

filteredSize

Number

number of entries that match filter criteria

length

Number

number of entries in this response

start

Number

number of first entry in this response

totalSize

Number

number of all log entries

7.4. CURL sample

$ curl 'https://minerva-service.lcsb.uni.lu/minerva/api/projects/test_project/logs/?start=0&length=5&level=warning&sortColumn=id&sortOrder=asc&search=age' -X GET \
    --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx"

7.5. Sample Response

{
  "data" : [ {
    "id" : 368,
    "content" : "This is warning message",
    "level" : "WARNING",
    "type" : "OTHER",
    "objectIdentifier" : null,
    "objectClass" : null,
    "mapName" : "map_name",
    "source" : null
  } ],
  "totalSize" : 1,
  "filteredSize" : 1,
  "start" : 0,
  "length" : 1
}

8. Get statistics

Gets set of statistics about the project.

8.1. Path Parameters

Table 7. /minerva/api/projects/{projectId}/statistics
Parameter Description

projectId

project identifier

8.2. Response Fields

Path Type Description

reactionAnnotations

Object

list of reaction annotation types

elementAnnotations

Object

list of element annotation types

publications

Number

number of publications included in the project

8.3. CURL sample

$ curl 'https://minerva-service.lcsb.uni.lu/minerva/api/projects/test_project/statistics' -X GET \
    --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx"

8.4. Sample Response

{
  "elementAnnotations" : {
    "_3DMET" : 0,
    "ABS" : 0,
    "ACEVIEW_WORM" : 0,
    "AFFYMETRIX_PROBESET" : 0,
    "AFTOL" : 0,
    "ALLERGOME" : 0,
    "AMOEBADB" : 0,
    "ANATOMICAL_THERAPEUTIC_CHEMICAL" : 0,
    "ANATOMICAL_THERAPEUTIC_CHEMICAL_VETINARY" : 0,
    "ANIMAL_DIVERSITY_WEB" : 0,
    "ANIMAL_GENOME_CATTLE_QTL" : 0,
    "ANIMAL_GENOME_CHICKEN_QTL" : 0,
    "ANIMAL_GENOME_PIG_QTL" : 0,
    "ANIMAL_GENOME_SHEEP_QTL" : 0,
    "ANIMAL_TFDB_FAMILY" : 0,
    "ANTIBIOTIC_RESISTANCE_GENES_DATABASE" : 0,
    "ANTIBODY_REGISTRY" : 0,
    "ANTWEB" : 0,
    "APD" : 0,
    "APHIDBASE_TRANSCRIPT" : 0,
    "ARACHNOSERVER" : 0,
    "ARRAYEXPRESS" : 0,
    "ARRAYEXPRESS_PLATFORM" : 0,
    "ARXIV" : 0,
    "ASAP" : 0,
    "ASPGD_LOCUS" : 0,
    "ASPGD_PROTEIN" : 0,
    "ATCC" : 0,
    "AUTDB" : 0,
    "BACMAP_BIOGRAPHY" : 0,
    "BACMAP_MAP" : 0,
    "BDGP_EST" : 0,
    "BDGP_INSERTION_DB" : 0,
    "BEETLEBASE" : 0,
    "BGEE_FAMILY" : 0,
    "BGEE_GENE" : 0,
    "BGEE_ORGAN" : 0,
    "BGEE_STAGE" : 0,
    "BiGG_COMPARTMENT" : 0,
    "BiGG_METABOLITE" : 0,
    "BiGG_REACTIONS" : 0,
    "BINDINGDB" : 0,
    "BIOCARTA_PATHWAY" : 0,
    "BIOCATALOGUE" : 0,
    "BIOCYC" : 0,
    "BIOGRID" : 0,
    "BIOKC" : 0,
    "BIOMODELS_DATABASE" : 0,
    "BIONUMBERS" : 0,
    "BIOPORTAL" : 0,
    "BIOPROJECT" : 0,
    "BIOSAMPLE" : 0,
    "BIOSYSTEMS" : 0,
    "BITTERDB_COMPOUND" : 0,
    "BITTERDB_RECEPTOR" : 0,
    "BOLD_TAXONOMY" : 0,
    "BROAD_FUNGAL_GENOME_INITIATIVE" : 0,
    "BRENDA" : 0,
    "BRENDA_TISSUE_ONTOLOGY" : 0,
    "BUGBASE_EXPT" : 0,
    "BUGBASE_PROTOCOL" : 0,
    "BYKDB" : 0,
    "CANADIAN_DRUG_PRODUCT_DATABASE" : 0,
    "CANDIDA_GENOME_DATABASE" : 0,
    "CAPS_DB" : 0,
    "CAS" : 0,
    "CATH_DOMAIN" : 0,
    "CATH_SUPERFAMILY" : 0,
    "CAZY" : 0,
    "CCDS" : 0,
    "CELL_CYCLE_ONTOLOGY" : 0,
    "CELL_IMAGE_LIBRARY" : 0,
    "CELL_SIGNALING_TECHNOLOGY_PATHWAYS" : 0,
    "CELL_SIGNALING_TECHNOLOGY_ANTIBODY" : 0,
    "CELL_TYPE_ONTOLOGY" : 0,
    "CGSC_STRAIN" : 0,
    "CHARPROT" : 0,
    "CHEBI" : 1,
    "CHEMDB" : 0,
    "CHEM_ID_PLUS" : 0,
    "CHEMSPIDER" : 0,
    "CHEMBL_COMPOUND" : 0,
    "CHEMBL_TARGET" : 0,
    "CLDB" : 0,
    "CLINICAL_TRIALS_GOV" : 0,
    "CLINVAR_RECORD" : 0,
    "COG" : 0,
    "COMBINE_SPECIFICATIONS" : 0,
    "COMPLEX_PORTAL" : 0,
    "COMPULYEAST" : 0,
    "CONSERVED_DOMAIN_DATABASE" : 0,
    "CONOSERVER" : 0,
    "CORIELL_CELL_REPOSITORIES" : 0,
    "CORUM" : 0,
    "CPC" : 0,
    "CRYPTODB" : 0,
    "CSA" : 0,
    "CTD_GENE" : 0,
    "CTD_DISEASE" : 0,
    "CUTDB" : 0,
    "CUBE_DB" : 0,
    "DAILYMED" : 0,
    "DARC" : 0,
    "DATABASE_OF_INTERACTING_PROTEINS" : 0,
    "DATABASE_OF_QUANTITATIVE_CELLULAR_SIGNALING_MODEL" : 0,
    "DATABASE_OF_QUANTITATIVE_CELLULAR_SIGNALING_PATHWAY" : 0,
    "DATF" : 0,
    "DBD" : 0,
    "DBEST" : 0,
    "DBG2_INTRONS" : 0,
    "DBPROBE" : 0,
    "DB_SNP" : 0,
    "DEGRADOME_DATABASE" : 0,
    "DEPOD" : 0,
    "DICTYBASE_EST" : 0,
    "DICTYBASE_GENE" : 0,
    "DISPROT" : 0,
    "DOI" : 0,
    "DOMMINO" : 0,
    "DOOR" : 0,
    "DPV" : 0,
    "DRAGONDB_ALLELE" : 0,
    "DRAGONDB_DNA" : 0,
    "DRAGONDB_LOCUS" : 0,
    "DRAGONDB_PROTEIN" : 0,
    "DRSC" : 0,
    "DRUGBANK" : 0,
    "DRUGBANK_TARGET_V4" : 0,
    "EC" : 0,
    "ECHOBASE" : 0,
    "ECO" : 0,
    "ECOGENE" : 0,
    "ECOLIWIKI" : 0,
    "EDAM_ONTOLOGY" : 0,
    "EGGNOG" : 0,
    "ELM" : 0,
    "ENA" : 0,
    "ENSEMBL" : 0,
    "ENSEMBL_BACTERIA" : 0,
    "ENSEMBL_FUNGI" : 0,
    "ENSEMBL_METAZOA" : 0,
    "ENSEMBL_PLANTS" : 0,
    "ENSEMBL_PROTISTS" : 0,
    "ENTREZ" : 0,
    "ENVIPATH" : 0,
    "EPD" : 0,
    "EU_CLINICAL_TRIALS" : 0,
    "EXAC_GENE" : 0,
    "EXAC_TRANSCRIPT" : 0,
    "EXAC_VARIANT" : 0,
    "EXPERIMENTAL_FACTOR_ONTOLOGY" : 0,
    "EUROPEAN_GENOME_PHENOME_ARCHIVE_DATASET" : 0,
    "EUROPEAN_GENOME_PHENOME_ARCHIVE_STUDY" : 0,
    "FMA" : 0,
    "FOODB_COMPOUND" : 0,
    "F_SNP" : 0,
    "FUNCBASE_FLY" : 0,
    "FUNCBASE_HUMAN" : 0,
    "FUNCBASE_MOUSE" : 0,
    "FUNCBASE_YEAST" : 0,
    "FUNGIDB" : 0,
    "FLYBASE" : 0,
    "GABI" : 0,
    "GENATLAS" : 0,
    "GENECARDS" : 0,
    "GENE_DB" : 0,
    "GENEFARM" : 0,
    "GENETREE" : 0,
    "GENE_WIKI" : 0,
    "GENPEPT" : 0,
    "GENOME_PROPERTIES" : 0,
    "GENOMIC_DATA_COMMONS_DATA_PORTAL" : 0,
    "GEO" : 0,
    "GIARDIADB" : 0,
    "GLIDA_GPCR" : 0,
    "GLIDA_LIGAND" : 0,
    "GLYCOEPITOPE" : 0,
    "GLYCOMEDB" : 0,
    "GO" : 0,
    "GO_REF" : 0,
    "GOA" : 0,
    "GOLD_GENOME" : 0,
    "GOLD_METADATA" : 0,
    "GOOGLE_PATENTS" : 0,
    "GOLM_METABOLOME_DATABASE" : 0,
    "GOLM_METABOLOME_DATABASE_ANALYTE" : 0,
    "GOLM_METABOLOME_DATABASE_GC_MS_SPECTRA" : 0,
    "GOLM_METABOLOME_DATABASE_PROFILE" : 0,
    "GOLM_METABOLOME_DATABASE_REFERENCE_SUBSTANCE" : 0,
    "GPCRDB" : 0,
    "GRAMENE_GENES" : 0,
    "GRAMENE_PROTEIN" : 0,
    "GRAMENE_QTL" : 0,
    "GRAMENE_TAXONOMY" : 0,
    "GREENGENES" : 0,
    "GRIN_PLANT_TAXONOMY" : 0,
    "GRSDB" : 0,
    "GWAS_CENRAL_MARKER" : 0,
    "GWAS_CENRAL_PHENOTYPE" : 0,
    "GWAS_CENRAL_STUDY" : 0,
    "GXA_EXPT" : 0,
    "GXA_GENE" : 0,
    "HAMAP" : 0,
    "HCVDB" : 0,
    "HGMD" : 0,
    "HGNC" : 0,
    "HGNC_FAMILY" : 0,
    "HGNC_SYMBOL" : 1,
    "H_INVDB_LOCUS" : 0,
    "H_INVDB_PROTEIN" : 0,
    "H_INVDB_TRANSCRIPT" : 0,
    "HMDB" : 0,
    "HOGENOM" : 0,
    "HOMD_SEQUENCE_METAINFORMATION" : 0,
    "HOMD_TAXONOMY" : 0,
    "HOMEODOMAIN_RESEARCH" : 0,
    "HOMOLOGENE" : 0,
    "HOVERGEN" : 0,
    "HPA" : 0,
    "HPRD" : 0,
    "HSSP" : 0,
    "HUGE" : 0,
    "HUMAN_DISEASE_ONTOLOGY" : 0,
    "HUMAN_PHENOTYPE_ONTOLOGY" : 0,
    "HUMAN_PROTEOME_MAP_PEPTIDE" : 0,
    "HUMAN_PROTEOME_MAP_PROTEIN" : 0,
    "ICD" : 0,
    "ICEBERG_ELEMENT" : 0,
    "ICEBERG_FAMILY" : 0,
    "IDEAL" : 0,
    "IDENTIFIERS_ORG_TERMS" : 0,
    "IMEX" : 0,
    "IMGT_LIGM" : 0,
    "IMGT_HLA" : 0,
    "INCHI" : 0,
    "INCHIKEY" : 0,
    "INTACT" : 0,
    "INTACT_MOLECULE" : 0,
    "INTEGRATED_MICROBIAL_GENOMES_GENE" : 0,
    "INTEGRATED_MICROBIAL_GENOMES_TAXON" : 0,
    "INTERPRO" : 0,
    "IRD_SEGMENT_SEQUENCE" : 0,
    "IREFWEB" : 0,
    "ISBN" : 0,
    "ISFINDER" : 0,
    "ISSN" : 0,
    "IUPHAR_FAMILY" : 0,
    "IUPHAR_LIGAND" : 0,
    "IUPHAR_RECEPTOR" : 0,
    "JAPAN_COLLECTION_OF_MICROORGANISMS" : 0,
    "JAPAN_CHEMICAL_SUBSTANCE_DICTIONARY" : 0,
    "JAX_MICE" : 0,
    "JCGGDB" : 0,
    "JSTOR" : 0,
    "JWS_ONLINE" : 0,
    "KEGG_COMPOUND" : 0,
    "KEGG_DISEASE" : 0,
    "KEGG_DRUG" : 0,
    "KEGG_ENVIRON" : 0,
    "KEGG_GENES" : 0,
    "KEGG_GENOME" : 0,
    "KEGG_GLYCAN" : 0,
    "KEGG_METAGENOME" : 0,
    "KEGG_MODULE" : 0,
    "KEGG_ORTHOLOGY" : 0,
    "KEGG_PATHWAY" : 0,
    "KEGG_REACTION" : 0,
    "KISAO" : 0,
    "KNAPSACK" : 0,
    "LIGANDBOX" : 0,
    "LIGAND_EXPO" : 0,
    "LIGAND_GATED_ION_CHANNEL_DATABASE" : 0,
    "LIPID_BANK" : 0,
    "LINCS_PROTEIN" : 0,
    "LINCS_CELL" : 0,
    "LIPID_MAPS" : 0,
    "LOCUS_REFERENCE_GENOMIC" : 0,
    "MACIE" : 0,
    "MAIZEGDB_LOCUS" : 0,
    "MASSBANK" : 0,
    "MATHEMATICAL_MODELLING_ONTOLOGY" : 0,
    "MATRIXDB" : 0,
    "MEDLINEPLUS" : 0,
    "MEROPS_FAMILY" : 0,
    "MEROPS_INHIBITOR" : 0,
    "MEROPS" : 0,
    "MESH_2012" : 0,
    "METANETX_CHEMICAL" : 0,
    "METANETX_COMPARTMENT" : 0,
    "METANETX_REACTION" : 0,
    "METABOLIGHTS" : 0,
    "METLIN" : 0,
    "MI" : 0,
    "MICROSPORIDIADB" : 0,
    "MICROBIAL_PROTEIN_INTERACTION_DATABASE" : 0,
    "MIMODB" : 0,
    "MIPMODDB" : 0,
    "MI_R_BASE_SEQUENCE" : 0,
    "MI_R_BASE_MATURE_SEQUENCE" : 0,
    "MIREX" : 0,
    "MIRIAM_REGISTRY_COLLECTION" : 0,
    "MIRIAM_REGISTRY_RESOURCE" : 0,
    "MIRNEST" : 0,
    "MIR_TAR_BASE_MATURE_SEQUENCE" : 0,
    "MGD" : 0,
    "MGED_ONTOLOGY" : 0,
    "MGNIFY_PROJECT" : 0,
    "MGNIFY_SAMPLE" : 0,
    "MINT" : 0,
    "MMRRC" : 0,
    "MOD" : 0,
    "MODELDB" : 0,
    "MOLBASE" : 0,
    "MOLECULAR_MODELING_DATABASE" : 0,
    "MOUSE_ADULT_GROSS_ANATOMY" : 0,
    "MYCOBANK" : 0,
    "MYCOBROWSER_LEPRAE" : 0,
    "MYCOBROWSER_MARINUM" : 0,
    "MYCOBROWSER_SMEGMATIS" : 0,
    "MYCOBROWSER_TUBERCULOSIS" : 0,
    "NAPP" : 0,
    "NARCIS" : 0,
    "NASC_CODE" : 0,
    "NATIONAL_BIBLIOGRAPHY_NUMBER" : 0,
    "NATIONAL_DRUG_CODE" : 0,
    "NCBI_PROTEIN" : 0,
    "NCIM" : 0,
    "NCI_PATHWAY_INTERACTION_DATABASE_PATHWAY" : 0,
    "NCIT" : 0,
    "NEUROLEX" : 0,
    "NEUROMORPHO" : 0,
    "NEURONDB" : 0,
    "NEXTDB" : 0,
    "NEXTPROT" : 0,
    "NIAEST" : 0,
    "NITE_BIOLOGICAL_RESEARCH_CENTER_CATALOGUE" : 0,
    "NONCODE_V3" : 0,
    "NONCODE_V4_GENE" : 0,
    "NONCODE_V4_TRANSCRIPT" : 0,
    "NORINE" : 0,
    "NUCLEARDB" : 0,
    "NUCLEOTIDE_SEQUENCE_DATABASE" : 0,
    "OBI" : 0,
    "OMA_GROUP" : 0,
    "OMA_PROTEIN" : 0,
    "ODOR_MOLECULES_DATABASE" : 0,
    "OLFACTORY_RECEPTOR_DATABASE" : 0,
    "OMIA" : 0,
    "OMIM" : 0,
    "OMIT" : 0,
    "ONTOLOGY_OF_PHYSICS_FOR_BIOLOGY" : 0,
    "OPM" : 0,
    "ORCID" : 0,
    "ORIDB_SACCHAROMYCES" : 0,
    "ORIDB_SCHIZOSACCHAROMYCES" : 0,
    "ORPHANET" : 0,
    "ORPHANET_RARE_DISEASE_ONTOLOGY" : 0,
    "ORTHODB" : 0,
    "ORYZABASE_GENE" : 0,
    "ORYZABASE_MUTANT" : 0,
    "ORYZABASE_STAGE" : 0,
    "ORYZABASE_STRAIN" : 0,
    "ORYZA_TAG_LINE" : 0,
    "P3DB_PROTEIN" : 0,
    "P3DB_SITE" : 0,
    "PALEODB" : 0,
    "PANTHER" : 0,
    "PANTHER_NODE" : 0,
    "PANTHER_PATHWAY" : 0,
    "PANTHER_PATHWAY_COMPONENT" : 0,
    "PASS2" : 0,
    "PATHWAY_ONTOLOGY" : 0,
    "PATHWAY_COMMONS" : 0,
    "PATO" : 0,
    "PAXDB_ORGANISM" : 0,
    "PAXDB_PROTEIN" : 0,
    "PAZAR_TRANSCRIPTION_FACTOR" : 0,
    "PDB" : 0,
    "PDB_CCD" : 0,
    "PEPTIDEATLAS" : 0,
    "PEROXIBASE" : 0,
    "PFAM" : 0,
    "PHARM" : 0,
    "PHARMGKB_DISEASE" : 0,
    "PHARMGKB_DRUG" : 0,
    "PHARMGKB_GENE" : 0,
    "PHENOL_EXPLORER" : 0,
    "PHOSPHOPOINT_KINASE" : 0,
    "PHOSPHOPOINT_PHOSPHOPROTEIN" : 0,
    "PHOSPHOSITE_PROTEIN" : 0,
    "PHOSPHOSITE_RESIDUE" : 0,
    "PHYLOMEDB" : 0,
    "PHYTOZOME_LOCUS" : 0,
    "PINA" : 0,
    "PIROPLASMADB" : 0,
    "PIRSF" : 0,
    "PLANT_ONTOLOGY" : 0,
    "PLASMODB" : 0,
    "PMC" : 0,
    "POCKETOME" : 0,
    "POLBASE" : 0,
    "POMBASE" : 0,
    "PRIDE" : 0,
    "PRIDE_PROJECT" : 0,
    "PRINTS" : 0,
    "PROGLYCPROT" : 0,
    "PRODOM" : 0,
    "PROSITE" : 0,
    "PROTCLUSTDB" : 0,
    "PROTEIN_AFFINITY_REAGENTS" : 0,
    "PROTEIN_DATA_BANK_LIGAND" : 0,
    "PROTEIN_MODEL_DATABASE" : 0,
    "PROTEIN_ONTOLOGY" : 0,
    "PROTEOMICSDB_PEPTIDE" : 0,
    "PROTEOMICSDB_PROTEIN" : 0,
    "PROTONET_CLUSTER" : 0,
    "PROTONET_PROTEINCARD" : 0,
    "PSCDB" : 0,
    "PSEUDOMONAS_GENOME_DATABASE" : 0,
    "PUBCHEM" : 0,
    "PUBCHEM_BIOASSAY" : 0,
    "PUBCHEM_SUBSTANCE" : 0,
    "PUBMED" : 0,
    "RAT_GENOME_DATABASE_QTL" : 0,
    "RAT_GENOME_DATABASE_STRAIN" : 0,
    "REACTOME" : 0,
    "REBASE" : 0,
    "REFSEQ" : 0,
    "RELATION_ONTOLOGY" : 0,
    "RESID" : 0,
    "RFAM" : 0,
    "RGD" : 0,
    "RHEA" : 0,
    "RICE_GENOME_ANNOTATION_PROJECT" : 0,
    "RNA_MODIFICATION_DATABASE" : 0,
    "ROUGE" : 0,
    "SABIO_RK_EC_RECORD" : 0,
    "SABIO_RK_KINETIC_RECORD" : 0,
    "SABIO_RK_REACTION" : 0,
    "SACCHAROMYCES_GENOME_DATABASE_PATHWAYS" : 0,
    "SBML_RDF_VOCABULARY" : 0,
    "SBO_TERM" : 0,
    "SCOP" : 0,
    "SCERTF" : 0,
    "SEED_COMPOUND" : 0,
    "SEED_REACTIONS" : 0,
    "SEQUENCE_ONTOLOGY" : 0,
    "SEQUENCE_READ_ARCHIVE" : 0,
    "SGD" : 0,
    "SIDER_DRUG" : 0,
    "SIDER_SIDE_EFFECT" : 0,
    "SIGNALING_GATEWAY" : 0,
    "SITEX" : 0,
    "SMALL_MOLECULE_PATHWAY_DATABASE" : 0,
    "SMART" : 0,
    "SNOMED_CT" : 0,
    "SOL_GENOMICS_NETWORK" : 0,
    "SOYBASE" : 0,
    "SPECTRAL_DATABASE_FOR_ORGANIC_COMPOUNDS" : 0,
    "SPIKE" : 0,
    "STAP" : 0,
    "STITCH" : 0,
    "STRING" : 0,
    "SUBSTRATEDB" : 0,
    "SUBTILIST" : 0,
    "SUPFAM" : 0,
    "SUBTIWIKI" : 0,
    "SWISS_LIPIDS" : 0,
    "SWISS_MODEL" : 0,
    "T3DB" : 0,
    "TAIR_GENE" : 0,
    "TAIR_PROTEIN" : 0,
    "TAIR_LOCUS" : 0,
    "TARBASE" : 0,
    "TAXONOMY" : 0,
    "TEDDY" : 0,
    "TETRAHYMENA_GENOME_DATABASE" : 0,
    "TIGRFAMS" : 0,
    "TISSUE_LIST" : 0,
    "TOPDB" : 0,
    "TOPFIND" : 0,
    "TOXICOGENOMIC_CHEMICAL" : 0,
    "TOXODB" : 0,
    "TREEBASE" : 0,
    "TREEFAM" : 0,
    "TREE_OF_LIFE" : 0,
    "TRICHDB" : 0,
    "TRITRYPDB" : 0,
    "TTD_Drug" : 0,
    "TTD_TARGET" : 0,
    "TRANSPORT_CLASSIFICATION_DATABASE" : 0,
    "UBERON" : 0,
    "UBIO_NAMEBANK" : 0,
    "UM_BBD_COMPOUND" : 0,
    "UM_BBD_ENZYME" : 0,
    "UM_BBD_PATHWAY" : 0,
    "UM_BBD_REACTION" : 0,
    "UM_BBD_BIOTRANSFORMATION_RULE" : 0,
    "UNIGENE" : 0,
    "UNII" : 0,
    "UNIMOD" : 0,
    "UNIPARC" : 0,
    "UNIPATHWAY_REACTION" : 0,
    "UNIPROT" : 0,
    "UNIPROT_ISOFORM" : 0,
    "UNISTS" : 0,
    "UNIT_ONTOLOGY" : 0,
    "UNITE" : 0,
    "USPTO" : 0,
    "UNKNOWN" : 0,
    "VARIO" : 0,
    "VBASE2" : 0,
    "VBRC" : 0,
    "VFDB_GENE" : 0,
    "VFDB_GENUS" : 0,
    "VIRALZONE" : 0,
    "VIRSIRNA" : 0,
    "VMH_METABOLITE" : 0,
    "VMH_REACTION" : 0,
    "WIKIDATA" : 0,
    "WIKIGENES" : 0,
    "WIKIPATHWAYS" : 0,
    "WIKIPEDIA" : 0,
    "WORFDB" : 0,
    "WORM_BASE" : 0,
    "WORM_BASE_RNAI" : 0,
    "WORMPEP" : 0,
    "XENBASE" : 0,
    "YDPM" : 0,
    "YEAST_INTRON_DATABASE_V4_3" : 0,
    "YETFASCO" : 0,
    "YEAST_INTRON_DATABASE_V3" : 0,
    "YRC_PDR" : 0,
    "ZFIN" : 0,
    "ZINC" : 0
  },
  "publications" : 2,
  "reactionAnnotations" : {
    "_3DMET" : 0,
    "ABS" : 0,
    "ACEVIEW_WORM" : 0,
    "AFFYMETRIX_PROBESET" : 0,
    "AFTOL" : 0,
    "ALLERGOME" : 0,
    "AMOEBADB" : 0,
    "ANATOMICAL_THERAPEUTIC_CHEMICAL" : 0,
    "ANATOMICAL_THERAPEUTIC_CHEMICAL_VETINARY" : 0,
    "ANIMAL_DIVERSITY_WEB" : 0,
    "ANIMAL_GENOME_CATTLE_QTL" : 0,
    "ANIMAL_GENOME_CHICKEN_QTL" : 0,
    "ANIMAL_GENOME_PIG_QTL" : 0,
    "ANIMAL_GENOME_SHEEP_QTL" : 0,
    "ANIMAL_TFDB_FAMILY" : 0,
    "ANTIBIOTIC_RESISTANCE_GENES_DATABASE" : 0,
    "ANTIBODY_REGISTRY" : 0,
    "ANTWEB" : 0,
    "APD" : 0,
    "APHIDBASE_TRANSCRIPT" : 0,
    "ARACHNOSERVER" : 0,
    "ARRAYEXPRESS" : 0,
    "ARRAYEXPRESS_PLATFORM" : 0,
    "ARXIV" : 0,
    "ASAP" : 0,
    "ASPGD_LOCUS" : 0,
    "ASPGD_PROTEIN" : 0,
    "ATCC" : 0,
    "AUTDB" : 0,
    "BACMAP_BIOGRAPHY" : 0,
    "BACMAP_MAP" : 0,
    "BDGP_EST" : 0,
    "BDGP_INSERTION_DB" : 0,
    "BEETLEBASE" : 0,
    "BGEE_FAMILY" : 0,
    "BGEE_GENE" : 0,
    "BGEE_ORGAN" : 0,
    "BGEE_STAGE" : 0,
    "BiGG_COMPARTMENT" : 0,
    "BiGG_METABOLITE" : 0,
    "BiGG_REACTIONS" : 0,
    "BINDINGDB" : 0,
    "BIOCARTA_PATHWAY" : 0,
    "BIOCATALOGUE" : 0,
    "BIOCYC" : 0,
    "BIOGRID" : 0,
    "BIOKC" : 0,
    "BIOMODELS_DATABASE" : 0,
    "BIONUMBERS" : 0,
    "BIOPORTAL" : 0,
    "BIOPROJECT" : 0,
    "BIOSAMPLE" : 0,
    "BIOSYSTEMS" : 0,
    "BITTERDB_COMPOUND" : 0,
    "BITTERDB_RECEPTOR" : 0,
    "BOLD_TAXONOMY" : 0,
    "BROAD_FUNGAL_GENOME_INITIATIVE" : 0,
    "BRENDA" : 0,
    "BRENDA_TISSUE_ONTOLOGY" : 0,
    "BUGBASE_EXPT" : 0,
    "BUGBASE_PROTOCOL" : 0,
    "BYKDB" : 0,
    "CANADIAN_DRUG_PRODUCT_DATABASE" : 0,
    "CANDIDA_GENOME_DATABASE" : 0,
    "CAPS_DB" : 0,
    "CAS" : 0,
    "CATH_DOMAIN" : 0,
    "CATH_SUPERFAMILY" : 0,
    "CAZY" : 0,
    "CCDS" : 0,
    "CELL_CYCLE_ONTOLOGY" : 0,
    "CELL_IMAGE_LIBRARY" : 0,
    "CELL_SIGNALING_TECHNOLOGY_PATHWAYS" : 0,
    "CELL_SIGNALING_TECHNOLOGY_ANTIBODY" : 0,
    "CELL_TYPE_ONTOLOGY" : 0,
    "CGSC_STRAIN" : 0,
    "CHARPROT" : 0,
    "CHEBI" : 0,
    "CHEMDB" : 0,
    "CHEM_ID_PLUS" : 0,
    "CHEMSPIDER" : 0,
    "CHEMBL_COMPOUND" : 0,
    "CHEMBL_TARGET" : 0,
    "CLDB" : 0,
    "CLINICAL_TRIALS_GOV" : 0,
    "CLINVAR_RECORD" : 0,
    "COG" : 0,
    "COMBINE_SPECIFICATIONS" : 0,
    "COMPLEX_PORTAL" : 0,
    "COMPULYEAST" : 0,
    "CONSERVED_DOMAIN_DATABASE" : 0,
    "CONOSERVER" : 0,
    "CORIELL_CELL_REPOSITORIES" : 0,
    "CORUM" : 0,
    "CPC" : 0,
    "CRYPTODB" : 0,
    "CSA" : 0,
    "CTD_GENE" : 0,
    "CTD_DISEASE" : 0,
    "CUTDB" : 0,
    "CUBE_DB" : 0,
    "DAILYMED" : 0,
    "DARC" : 0,
    "DATABASE_OF_INTERACTING_PROTEINS" : 0,
    "DATABASE_OF_QUANTITATIVE_CELLULAR_SIGNALING_MODEL" : 0,
    "DATABASE_OF_QUANTITATIVE_CELLULAR_SIGNALING_PATHWAY" : 0,
    "DATF" : 0,
    "DBD" : 0,
    "DBEST" : 0,
    "DBG2_INTRONS" : 0,
    "DBPROBE" : 0,
    "DB_SNP" : 0,
    "DEGRADOME_DATABASE" : 0,
    "DEPOD" : 0,
    "DICTYBASE_EST" : 0,
    "DICTYBASE_GENE" : 0,
    "DISPROT" : 0,
    "DOI" : 0,
    "DOMMINO" : 0,
    "DOOR" : 0,
    "DPV" : 0,
    "DRAGONDB_ALLELE" : 0,
    "DRAGONDB_DNA" : 0,
    "DRAGONDB_LOCUS" : 0,
    "DRAGONDB_PROTEIN" : 0,
    "DRSC" : 0,
    "DRUGBANK" : 0,
    "DRUGBANK_TARGET_V4" : 0,
    "EC" : 0,
    "ECHOBASE" : 0,
    "ECO" : 0,
    "ECOGENE" : 0,
    "ECOLIWIKI" : 0,
    "EDAM_ONTOLOGY" : 0,
    "EGGNOG" : 0,
    "ELM" : 0,
    "ENA" : 0,
    "ENSEMBL" : 0,
    "ENSEMBL_BACTERIA" : 0,
    "ENSEMBL_FUNGI" : 0,
    "ENSEMBL_METAZOA" : 0,
    "ENSEMBL_PLANTS" : 0,
    "ENSEMBL_PROTISTS" : 0,
    "ENTREZ" : 0,
    "ENVIPATH" : 0,
    "EPD" : 0,
    "EU_CLINICAL_TRIALS" : 0,
    "EXAC_GENE" : 0,
    "EXAC_TRANSCRIPT" : 0,
    "EXAC_VARIANT" : 0,
    "EXPERIMENTAL_FACTOR_ONTOLOGY" : 0,
    "EUROPEAN_GENOME_PHENOME_ARCHIVE_DATASET" : 0,
    "EUROPEAN_GENOME_PHENOME_ARCHIVE_STUDY" : 0,
    "FMA" : 0,
    "FOODB_COMPOUND" : 0,
    "F_SNP" : 0,
    "FUNCBASE_FLY" : 0,
    "FUNCBASE_HUMAN" : 0,
    "FUNCBASE_MOUSE" : 0,
    "FUNCBASE_YEAST" : 0,
    "FUNGIDB" : 0,
    "FLYBASE" : 0,
    "GABI" : 0,
    "GENATLAS" : 0,
    "GENECARDS" : 0,
    "GENE_DB" : 0,
    "GENEFARM" : 0,
    "GENETREE" : 0,
    "GENE_WIKI" : 0,
    "GENPEPT" : 0,
    "GENOME_PROPERTIES" : 0,
    "GENOMIC_DATA_COMMONS_DATA_PORTAL" : 0,
    "GEO" : 0,
    "GIARDIADB" : 0,
    "GLIDA_GPCR" : 0,
    "GLIDA_LIGAND" : 0,
    "GLYCOEPITOPE" : 0,
    "GLYCOMEDB" : 0,
    "GO" : 0,
    "GO_REF" : 0,
    "GOA" : 0,
    "GOLD_GENOME" : 0,
    "GOLD_METADATA" : 0,
    "GOOGLE_PATENTS" : 0,
    "GOLM_METABOLOME_DATABASE" : 0,
    "GOLM_METABOLOME_DATABASE_ANALYTE" : 0,
    "GOLM_METABOLOME_DATABASE_GC_MS_SPECTRA" : 0,
    "GOLM_METABOLOME_DATABASE_PROFILE" : 0,
    "GOLM_METABOLOME_DATABASE_REFERENCE_SUBSTANCE" : 0,
    "GPCRDB" : 0,
    "GRAMENE_GENES" : 0,
    "GRAMENE_PROTEIN" : 0,
    "GRAMENE_QTL" : 0,
    "GRAMENE_TAXONOMY" : 0,
    "GREENGENES" : 0,
    "GRIN_PLANT_TAXONOMY" : 0,
    "GRSDB" : 0,
    "GWAS_CENRAL_MARKER" : 0,
    "GWAS_CENRAL_PHENOTYPE" : 0,
    "GWAS_CENRAL_STUDY" : 0,
    "GXA_EXPT" : 0,
    "GXA_GENE" : 0,
    "HAMAP" : 0,
    "HCVDB" : 0,
    "HGMD" : 0,
    "HGNC" : 0,
    "HGNC_FAMILY" : 0,
    "HGNC_SYMBOL" : 0,
    "H_INVDB_LOCUS" : 0,
    "H_INVDB_PROTEIN" : 0,
    "H_INVDB_TRANSCRIPT" : 0,
    "HMDB" : 0,
    "HOGENOM" : 0,
    "HOMD_SEQUENCE_METAINFORMATION" : 0,
    "HOMD_TAXONOMY" : 0,
    "HOMEODOMAIN_RESEARCH" : 0,
    "HOMOLOGENE" : 0,
    "HOVERGEN" : 0,
    "HPA" : 0,
    "HPRD" : 0,
    "HSSP" : 0,
    "HUGE" : 0,
    "HUMAN_DISEASE_ONTOLOGY" : 0,
    "HUMAN_PHENOTYPE_ONTOLOGY" : 0,
    "HUMAN_PROTEOME_MAP_PEPTIDE" : 0,
    "HUMAN_PROTEOME_MAP_PROTEIN" : 0,
    "ICD" : 0,
    "ICEBERG_ELEMENT" : 0,
    "ICEBERG_FAMILY" : 0,
    "IDEAL" : 0,
    "IDENTIFIERS_ORG_TERMS" : 0,
    "IMEX" : 0,
    "IMGT_LIGM" : 0,
    "IMGT_HLA" : 0,
    "INCHI" : 0,
    "INCHIKEY" : 0,
    "INTACT" : 0,
    "INTACT_MOLECULE" : 0,
    "INTEGRATED_MICROBIAL_GENOMES_GENE" : 0,
    "INTEGRATED_MICROBIAL_GENOMES_TAXON" : 0,
    "INTERPRO" : 0,
    "IRD_SEGMENT_SEQUENCE" : 0,
    "IREFWEB" : 0,
    "ISBN" : 0,
    "ISFINDER" : 0,
    "ISSN" : 0,
    "IUPHAR_FAMILY" : 0,
    "IUPHAR_LIGAND" : 0,
    "IUPHAR_RECEPTOR" : 0,
    "JAPAN_COLLECTION_OF_MICROORGANISMS" : 0,
    "JAPAN_CHEMICAL_SUBSTANCE_DICTIONARY" : 0,
    "JAX_MICE" : 0,
    "JCGGDB" : 0,
    "JSTOR" : 0,
    "JWS_ONLINE" : 0,
    "KEGG_COMPOUND" : 0,
    "KEGG_DISEASE" : 0,
    "KEGG_DRUG" : 0,
    "KEGG_ENVIRON" : 0,
    "KEGG_GENES" : 0,
    "KEGG_GENOME" : 0,
    "KEGG_GLYCAN" : 0,
    "KEGG_METAGENOME" : 0,
    "KEGG_MODULE" : 0,
    "KEGG_ORTHOLOGY" : 0,
    "KEGG_PATHWAY" : 0,
    "KEGG_REACTION" : 0,
    "KISAO" : 0,
    "KNAPSACK" : 0,
    "LIGANDBOX" : 0,
    "LIGAND_EXPO" : 0,
    "LIGAND_GATED_ION_CHANNEL_DATABASE" : 0,
    "LIPID_BANK" : 0,
    "LINCS_PROTEIN" : 0,
    "LINCS_CELL" : 0,
    "LIPID_MAPS" : 0,
    "LOCUS_REFERENCE_GENOMIC" : 0,
    "MACIE" : 0,
    "MAIZEGDB_LOCUS" : 0,
    "MASSBANK" : 0,
    "MATHEMATICAL_MODELLING_ONTOLOGY" : 0,
    "MATRIXDB" : 0,
    "MEDLINEPLUS" : 0,
    "MEROPS_FAMILY" : 0,
    "MEROPS_INHIBITOR" : 0,
    "MEROPS" : 0,
    "MESH_2012" : 0,
    "METANETX_CHEMICAL" : 0,
    "METANETX_COMPARTMENT" : 0,
    "METANETX_REACTION" : 0,
    "METABOLIGHTS" : 0,
    "METLIN" : 0,
    "MI" : 0,
    "MICROSPORIDIADB" : 0,
    "MICROBIAL_PROTEIN_INTERACTION_DATABASE" : 0,
    "MIMODB" : 0,
    "MIPMODDB" : 0,
    "MI_R_BASE_SEQUENCE" : 0,
    "MI_R_BASE_MATURE_SEQUENCE" : 0,
    "MIREX" : 0,
    "MIRIAM_REGISTRY_COLLECTION" : 0,
    "MIRIAM_REGISTRY_RESOURCE" : 0,
    "MIRNEST" : 0,
    "MIR_TAR_BASE_MATURE_SEQUENCE" : 0,
    "MGD" : 0,
    "MGED_ONTOLOGY" : 0,
    "MGNIFY_PROJECT" : 0,
    "MGNIFY_SAMPLE" : 0,
    "MINT" : 0,
    "MMRRC" : 0,
    "MOD" : 0,
    "MODELDB" : 0,
    "MOLBASE" : 0,
    "MOLECULAR_MODELING_DATABASE" : 0,
    "MOUSE_ADULT_GROSS_ANATOMY" : 0,
    "MYCOBANK" : 0,
    "MYCOBROWSER_LEPRAE" : 0,
    "MYCOBROWSER_MARINUM" : 0,
    "MYCOBROWSER_SMEGMATIS" : 0,
    "MYCOBROWSER_TUBERCULOSIS" : 0,
    "NAPP" : 0,
    "NARCIS" : 0,
    "NASC_CODE" : 0,
    "NATIONAL_BIBLIOGRAPHY_NUMBER" : 0,
    "NATIONAL_DRUG_CODE" : 0,
    "NCBI_PROTEIN" : 0,
    "NCIM" : 0,
    "NCI_PATHWAY_INTERACTION_DATABASE_PATHWAY" : 0,
    "NCIT" : 0,
    "NEUROLEX" : 0,
    "NEUROMORPHO" : 0,
    "NEURONDB" : 0,
    "NEXTDB" : 0,
    "NEXTPROT" : 0,
    "NIAEST" : 0,
    "NITE_BIOLOGICAL_RESEARCH_CENTER_CATALOGUE" : 0,
    "NONCODE_V3" : 0,
    "NONCODE_V4_GENE" : 0,
    "NONCODE_V4_TRANSCRIPT" : 0,
    "NORINE" : 0,
    "NUCLEARDB" : 0,
    "NUCLEOTIDE_SEQUENCE_DATABASE" : 0,
    "OBI" : 0,
    "OMA_GROUP" : 0,
    "OMA_PROTEIN" : 0,
    "ODOR_MOLECULES_DATABASE" : 0,
    "OLFACTORY_RECEPTOR_DATABASE" : 0,
    "OMIA" : 0,
    "OMIM" : 0,
    "OMIT" : 0,
    "ONTOLOGY_OF_PHYSICS_FOR_BIOLOGY" : 0,
    "OPM" : 0,
    "ORCID" : 0,
    "ORIDB_SACCHAROMYCES" : 0,
    "ORIDB_SCHIZOSACCHAROMYCES" : 0,
    "ORPHANET" : 0,
    "ORPHANET_RARE_DISEASE_ONTOLOGY" : 0,
    "ORTHODB" : 0,
    "ORYZABASE_GENE" : 0,
    "ORYZABASE_MUTANT" : 0,
    "ORYZABASE_STAGE" : 0,
    "ORYZABASE_STRAIN" : 0,
    "ORYZA_TAG_LINE" : 0,
    "P3DB_PROTEIN" : 0,
    "P3DB_SITE" : 0,
    "PALEODB" : 0,
    "PANTHER" : 0,
    "PANTHER_NODE" : 0,
    "PANTHER_PATHWAY" : 0,
    "PANTHER_PATHWAY_COMPONENT" : 0,
    "PASS2" : 0,
    "PATHWAY_ONTOLOGY" : 0,
    "PATHWAY_COMMONS" : 0,
    "PATO" : 0,
    "PAXDB_ORGANISM" : 0,
    "PAXDB_PROTEIN" : 0,
    "PAZAR_TRANSCRIPTION_FACTOR" : 0,
    "PDB" : 0,
    "PDB_CCD" : 0,
    "PEPTIDEATLAS" : 0,
    "PEROXIBASE" : 0,
    "PFAM" : 0,
    "PHARM" : 0,
    "PHARMGKB_DISEASE" : 0,
    "PHARMGKB_DRUG" : 0,
    "PHARMGKB_GENE" : 0,
    "PHENOL_EXPLORER" : 0,
    "PHOSPHOPOINT_KINASE" : 0,
    "PHOSPHOPOINT_PHOSPHOPROTEIN" : 0,
    "PHOSPHOSITE_PROTEIN" : 0,
    "PHOSPHOSITE_RESIDUE" : 0,
    "PHYLOMEDB" : 0,
    "PHYTOZOME_LOCUS" : 0,
    "PINA" : 0,
    "PIROPLASMADB" : 0,
    "PIRSF" : 0,
    "PLANT_ONTOLOGY" : 0,
    "PLASMODB" : 0,
    "PMC" : 0,
    "POCKETOME" : 0,
    "POLBASE" : 0,
    "POMBASE" : 0,
    "PRIDE" : 0,
    "PRIDE_PROJECT" : 0,
    "PRINTS" : 0,
    "PROGLYCPROT" : 0,
    "PRODOM" : 0,
    "PROSITE" : 0,
    "PROTCLUSTDB" : 0,
    "PROTEIN_AFFINITY_REAGENTS" : 0,
    "PROTEIN_DATA_BANK_LIGAND" : 0,
    "PROTEIN_MODEL_DATABASE" : 0,
    "PROTEIN_ONTOLOGY" : 0,
    "PROTEOMICSDB_PEPTIDE" : 0,
    "PROTEOMICSDB_PROTEIN" : 0,
    "PROTONET_CLUSTER" : 0,
    "PROTONET_PROTEINCARD" : 0,
    "PSCDB" : 0,
    "PSEUDOMONAS_GENOME_DATABASE" : 0,
    "PUBCHEM" : 0,
    "PUBCHEM_BIOASSAY" : 0,
    "PUBCHEM_SUBSTANCE" : 0,
    "PUBMED" : 2,
    "RAT_GENOME_DATABASE_QTL" : 0,
    "RAT_GENOME_DATABASE_STRAIN" : 0,
    "REACTOME" : 0,
    "REBASE" : 0,
    "REFSEQ" : 0,
    "RELATION_ONTOLOGY" : 0,
    "RESID" : 0,
    "RFAM" : 0,
    "RGD" : 0,
    "RHEA" : 0,
    "RICE_GENOME_ANNOTATION_PROJECT" : 0,
    "RNA_MODIFICATION_DATABASE" : 0,
    "ROUGE" : 0,
    "SABIO_RK_EC_RECORD" : 0,
    "SABIO_RK_KINETIC_RECORD" : 0,
    "SABIO_RK_REACTION" : 0,
    "SACCHAROMYCES_GENOME_DATABASE_PATHWAYS" : 0,
    "SBML_RDF_VOCABULARY" : 0,
    "SBO_TERM" : 0,
    "SCOP" : 0,
    "SCERTF" : 0,
    "SEED_COMPOUND" : 0,
    "SEED_REACTIONS" : 0,
    "SEQUENCE_ONTOLOGY" : 0,
    "SEQUENCE_READ_ARCHIVE" : 0,
    "SGD" : 0,
    "SIDER_DRUG" : 0,
    "SIDER_SIDE_EFFECT" : 0,
    "SIGNALING_GATEWAY" : 0,
    "SITEX" : 0,
    "SMALL_MOLECULE_PATHWAY_DATABASE" : 0,
    "SMART" : 0,
    "SNOMED_CT" : 0,
    "SOL_GENOMICS_NETWORK" : 0,
    "SOYBASE" : 0,
    "SPECTRAL_DATABASE_FOR_ORGANIC_COMPOUNDS" : 0,
    "SPIKE" : 0,
    "STAP" : 0,
    "STITCH" : 0,
    "STRING" : 0,
    "SUBSTRATEDB" : 0,
    "SUBTILIST" : 0,
    "SUPFAM" : 0,
    "SUBTIWIKI" : 0,
    "SWISS_LIPIDS" : 0,
    "SWISS_MODEL" : 0,
    "T3DB" : 0,
    "TAIR_GENE" : 0,
    "TAIR_PROTEIN" : 0,
    "TAIR_LOCUS" : 0,
    "TARBASE" : 0,
    "TAXONOMY" : 0,
    "TEDDY" : 0,
    "TETRAHYMENA_GENOME_DATABASE" : 0,
    "TIGRFAMS" : 0,
    "TISSUE_LIST" : 0,
    "TOPDB" : 0,
    "TOPFIND" : 0,
    "TOXICOGENOMIC_CHEMICAL" : 0,
    "TOXODB" : 0,
    "TREEBASE" : 0,
    "TREEFAM" : 0,
    "TREE_OF_LIFE" : 0,
    "TRICHDB" : 0,
    "TRITRYPDB" : 0,
    "TTD_Drug" : 0,
    "TTD_TARGET" : 0,
    "TRANSPORT_CLASSIFICATION_DATABASE" : 0,
    "UBERON" : 0,
    "UBIO_NAMEBANK" : 0,
    "UM_BBD_COMPOUND" : 0,
    "UM_BBD_ENZYME" : 0,
    "UM_BBD_PATHWAY" : 0,
    "UM_BBD_REACTION" : 0,
    "UM_BBD_BIOTRANSFORMATION_RULE" : 0,
    "UNIGENE" : 0,
    "UNII" : 0,
    "UNIMOD" : 0,
    "UNIPARC" : 0,
    "UNIPATHWAY_REACTION" : 0,
    "UNIPROT" : 0,
    "UNIPROT_ISOFORM" : 0,
    "UNISTS" : 0,
    "UNIT_ONTOLOGY" : 0,
    "UNITE" : 0,
    "USPTO" : 0,
    "UNKNOWN" : 0,
    "VARIO" : 0,
    "VBASE2" : 0,
    "VBRC" : 0,
    "VFDB_GENE" : 0,
    "VFDB_GENUS" : 0,
    "VIRALZONE" : 0,
    "VIRSIRNA" : 0,
    "VMH_METABOLITE" : 0,
    "VMH_REACTION" : 0,
    "WIKIDATA" : 0,
    "WIKIGENES" : 0,
    "WIKIPATHWAYS" : 0,
    "WIKIPEDIA" : 0,
    "WORFDB" : 0,
    "WORM_BASE" : 0,
    "WORM_BASE_RNAI" : 0,
    "WORMPEP" : 0,
    "XENBASE" : 0,
    "YDPM" : 0,
    "YEAST_INTRON_DATABASE_V4_3" : 0,
    "YETFASCO" : 0,
    "YEAST_INTRON_DATABASE_V3" : 0,
    "YRC_PDR" : 0,
    "ZFIN" : 0,
    "ZINC" : 0
  }
}

9. Get publications

Gets publication list used in the project.

9.1. Path Parameters

Table 8. /minerva/api/projects/{projectId}/models/{mapId}/publications/
Parameter Description

projectId

project identifier

mapId

submap identifier (use '*' to indicate all maps)

9.2. Request Parameters

Parameter Description

start

number of first entry in this response

sortColumn

log entry column that should be used for sorting (default: id)

sortOrder

log entry sort order (asc, desc)

level

level of log entry (warning, error)

length

number of log entries we want to obtain

search

search query used for filtering

9.3. Response Fields

Path Type Description

data

Array

list of publication data

data[].elements

Array

list of bioEntities annotated with publication

data[].publication

Object

publication

data[].publication.article.title

String

title

data[].publication.article.authors

Array

authors

data[].publication.article.journal

String

journal

data[].publication.article.year

Number

year

data[].publication.article.link

String

link

data[].publication.article.pubmedId

String

pubmed id

data[].publication.article.citationCount

Number

citation count

filteredSize

Number

number of entries that match filter criteria

length

Number

number of entries in this response

page

Number

page number of result list

totalSize

Number

number of all log entries

9.4. CURL sample

$ curl 'https://minerva-service.lcsb.uni.lu/minerva/api/projects/test_project/models/783/publications/' -X GET \
    --cookie "MINERVA_AUTH_TOKEN=xxxxxxxx"

9.5. Sample Response

{
  "data" : [ {
    "elements" : [ {
      "id" : 396,
      "modelId" : 783,
      "type" : "REACTION"
    } ],
    "publication" : {
      "article" : {
        "title" : "MINERVA-a platform for visualization and curation of molecular interaction networks.",
        "authors" : [ "Gawron P", " Ostaszewski M", " Satagopam V", " Gebel S", " Mazein A", " Kuzma M", " Zorzan S", " McGee F", " Otjacques B", " Balling R", " Schneider R." ],
        "journal" : "NPJ systems biology and applications",
        "year" : 2016,
        "link" : "https://pubmed.ncbi.nlm.nih.gov/28725475/",
        "pubmedId" : "28725475",
        "citationCount" : 59
      }
    }
  } ],
  "totalSize" : 1,
  "filteredSize" : 1,
  "length" : 10,
  "page" : 0
}