Lists of the types supported by the instance.
All of them are served from the /new_api/configuration/ path.
1. List identifiers.org types
The identifier types (UniProt, ChEBI, HGNC, GO, …) that annotations of elements and reactions can point to, so this is the vocabulary behind the annotations sub-resources.
Every entry gives the name used in the API, the registry identifier assigned by identifiers.org and the URIs recognised for that database.
1.1. HTTP request
GET /minerva/new_api/configuration/miriam_types/ HTTP/1.11.2. CURL sample
$ curl 'https://minerva-dev.lcsb.uni.lu/minerva/new_api/configuration/miriam_types/' -X GET1.3. HTTP response
HTTP/1.1 200 OK1.4. Response Fields
| Path | Type | Description |
|---|---|---|
|
|
enum name of the identifier type |
|
|
human readable name of the identifier type |
|
|
url to database homepage |
|
|
unique identifier used by identifiers.org to reference this type |
|
|
list of uris used by this identifier type |
1.5. Sample Response
[ {
"name" : "_3DMET",
"commonName" : "3DMET",
"homepage" : "http://www.3dmet.dna.affrc.go.jp/",
"registryIdentifier" : " MIR:00000066",
"uris" : [ "urn:miriam:3dmet", "http://identifiers.org/3dmet/", "http://identifiers.org/3dmet", "https://identifiers.org/3dmet/", "https://identifiers.org/3dmet" ]
}, {
"name" : "ABS",
"commonName" : "ABS",
"homepage" : "http://genome.crg.es/datasets/abs2005/",
"registryIdentifier" : "MIR:00000277",
"uris" : [ "urn:miriam:abs", "http://identifiers.org/abs/", "http://identifiers.org/abs", "https://identifiers.org/abs/", "https://identifiers.org/abs" ]
}, {
"name" : "ACEVIEW_WORM",
"commonName" : "Aceview Worm",
"homepage" : "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html?worm",
"registryIdentifier" : "MIR:00000282",
"uris" : [ "urn:miriam:aceview.worm", "http://identifiers.org/aceview.worm/", "http://identifiers.org/aceview.worm", "https://identifiers.org/aceview.worm/", "https://identifiers.org/aceview.worm" ]
}, {
"name" : "AFFYMETRIX_PROBESET",
"commonName" : "Affymetrix Probeset",
"homepage" : "http://www.affymetrix.com/",
"registryIdentifier" : "MIR:00000394",
"uris" : [ "urn:miriam:affy.probeset", "http://identifiers.org/affy.probeset/", "http://identifiers.org/affy.probeset", "https://identifiers.org/affy.probeset/", "https://identifiers.org/affy.probeset" ]
}, {
"name" : "AFTOL",
"commonName" : "AFTOL",
"homepage" : "http://aftol.org/data.php",
"registryIdentifier" : "MIR:00000411",
"uris" : [ "urn:miriam:aftol.taxonomy", "http://identifiers.org/aftol.taxonomy/", "http://identifiers.org/aftol.taxonomy", "https://identifiers.org/aftol.taxonomy/", "https://identifiers.org/aftol.taxonomy" ]
}, {
"name" : "ALLERGOME",
"commonName" : "Allergome",
"homepage" : "http://www.allergome.org/",
"registryIdentifier" : "MIR:00000334",
"uris" : [ "urn:miriam:allergome", "http://identifiers.org/allergome/", "http://identifiers.org/allergome", "https://identifiers.org/allergome/", "https://identifiers.org/allergome" ]
}, {
"name" : "AMOEBADB",
"commonName" : "AmoebaDB",
"homepage" : "http://amoebadb.org/amoeba/",
"registryIdentifier" : "MIR:00000148",
"uris" : [ "urn:miriam:amoebadb", "http://identifiers.org/amoebadb/", "http://identifiers.org/amoebadb", "https://identifiers.org/amoebadb/", "https://identifiers.org/amoebadb" ]
}, {
"name" : "ANATOMICAL_THERAPEUTIC_CHEMICAL",
"commonName" : "Anatomical Therapeutic Chemical",
"homepage" : "http://www.whocc.no/atc_ddd_index/",
"registryIdentifier" : "MIR:00000088",
"uris" : [ "urn:miriam:atc", "http://identifiers.org/atc/", "http://identifiers.org/atc", "https://identifiers.org/atc/", "https://identifiers.org/atc" ]
}, {
"name" : "ANATOMICAL_THERAPEUTIC_CHEMICAL_VETERINARY",
"commonName" : "Anatomical Therapeutic Chemical Veterinary",
"homepage" : "http://www.whocc.no/atcvet/atcvet_index/",
"registryIdentifier" : "MIR:00000267",
"uris" : [ "urn:miriam:atcvet", "http://identifiers.org/atcvet/", "http://identifiers.org/atcvet", "https://identifiers.org/atcvet/", "https://identifiers.org/atcvet" ]
}, {
"name" : "ANIMAL_DIVERSITY_WEB",
"commonName" : "Animal Diversity Web",
"homepage" : "https://animaldiversity.org/",
"registryIdentifier" : "MIR:00000492",
"uris" : [ "urn:miriam:adw", "http://identifiers.org/adw/", "http://identifiers.org/adw", "https://identifiers.org/adw/", "https://identifiers.org/adw" ]
}, {
"name" : "ANIMAL_GENOME_CATTLE_QTL",
"commonName" : "Animal Genome Cattle QTL",
"homepage" : "https://www.animalgenome.org/QTLdb",
"registryIdentifier" : "MIR:00000504",
"uris" : [ "urn:miriam:cattleqtldb", "http://identifiers.org/cattleqtldb/", "http://identifiers.org/cattleqtldb", "https://identifiers.org/cattleqtldb/", "https://identifiers.org/cattleqtldb" ]
}, {
"name" : "ANIMAL_GENOME_CHICKEN_QTL",
"commonName" : "Animal Genome Chicken QTL",
"homepage" : "https://www.animalgenome.org/QTLdb",
"registryIdentifier" : "MIR:00000505",
"uris" : [ "urn:miriam:chickenqtldb", "http://identifiers.org/chickenqtldb/", "http://identifiers.org/chickenqtldb", "https://identifiers.org/chickenqtldb/", "https://identifiers.org/chickenqtldb" ]
}, {
"name" : "ANIMAL_GENOME_PIG_QTL",
"commonName" : "Animal Genome Pig QTL",
"homepage" : "https://www.animalgenome.org/QTLdb",
"registryIdentifier" : "MIR:00000506",
"uris" : [ "urn:miriam:pigqtldb", "http://identifiers.org/pigqtldb/", "http://identifiers.org/pigqtldb", "https://identifiers.org/pigqtldb/", "https://identifiers.org/pigqtldb" ]
}, {
"name" : "ANIMAL_GENOME_SHEEP_QTL",
"commonName" : "Animal Genome Sheep QTL",
"homepage" : "https://www.animalgenome.org/QTLdb",
"registryIdentifier" : "MIR:00000507",
"uris" : [ "urn:miriam:sheepqtldb", "http://identifiers.org/sheepqtldb/", "http://identifiers.org/sheepqtldb", "https://identifiers.org/sheepqtldb/", "https://identifiers.org/sheepqtldb" ]
}, {
"name" : "ANIMAL_TFDB_FAMILY",
"commonName" : "Animal TFDB Family",
"homepage" : "http://www.bioguo.org/AnimalTFDB/family_index.php",
"registryIdentifier" : "MIR:00000316",
"uris" : [ "urn:miriam:atfdb.family", "http://identifiers.org/atfdb.family/", "http://identifiers.org/atfdb.family", "https://identifiers.org/atfdb.family/", "https://identifiers.org/atfdb.family" ]
}, {
"name" : "ANTIBIOTIC_RESISTANCE_GENES_DATABASE",
"commonName" : "Antibiotic Resistance Genes Database",
"homepage" : "http://ardb.cbcb.umd.edu/",
"registryIdentifier" : "MIR:00000522",
"uris" : [ "urn:miriam:ardb", "http://identifiers.org/ardb/", "http://identifiers.org/ardb", "https://identifiers.org/ardb/", "https://identifiers.org/ardb" ]
}, {
"name" : "ANTIBODY_REGISTRY",
"commonName" : "Antibody Registry",
"homepage" : "http://antibodyregistry.org/",
"registryIdentifier" : "MIR:00000516",
"uris" : [ "urn:miriam:antibodyregistry", "http://identifiers.org/antibodyregistry/", "http://identifiers.org/antibodyregistry", "https://identifiers.org/antibodyregistry/", "https://identifiers.org/antibodyregistry" ]
}, {
"name" : "ANTWEB",
"commonName" : "AntWeb",
"homepage" : "http://www.antweb.org/",
"registryIdentifier" : "MIR:00000146",
"uris" : [ "urn:miriam:antweb", "http://identifiers.org/antweb/", "http://identifiers.org/antweb", "https://identifiers.org/antweb/", "https://identifiers.org/antweb" ]
}, {
"name" : "APD",
"commonName" : "APD",
"homepage" : "http://aps.unmc.edu/AP/",
"registryIdentifier" : "MIR:00000278",
"uris" : [ "urn:miriam:apd", "http://identifiers.org/apd/", "http://identifiers.org/apd", "https://identifiers.org/apd/", "https://identifiers.org/apd" ]
}, {
"name" : "APHIDBASE_TRANSCRIPT",
"commonName" : "AphidBase Transcript",
"homepage" : "http://www.aphidbase.com/aphidbase",
"registryIdentifier" : "MIR:00000393",
"uris" : [ "urn:miriam:aphidbase.transcript", "http://identifiers.org/aphidbase.transcript/", "http://identifiers.org/aphidbase.transcript", "https://identifiers.org/aphidbase.transcript/", "https://identifiers.org/aphidbase.transcript" ]
}, {
"name" : "ARACHNOSERVER",
"commonName" : "ArachnoServer",
"homepage" : "http://www.arachnoserver.org/",
"registryIdentifier" : "MIR:00000193",
"uris" : [ "urn:miriam:arachnoserver", "http://identifiers.org/arachnoserver/", "http://identifiers.org/arachnoserver", "https://identifiers.org/arachnoserver/", "https://identifiers.org/arachnoserver" ]
}, {
"name" : "ARRAYEXPRESS",
"commonName" : "ArrayExpress",
"homepage" : "https://www.ebi.ac.uk/arrayexpress/",
"registryIdentifier" : "MIR:00000036",
"uris" : [ "urn:miriam:arrayexpress", "http://identifiers.org/arrayexpress/", "http://identifiers.org/arrayexpress", "https://identifiers.org/arrayexpress/", "https://identifiers.org/arrayexpress" ]
}, {
"name" : "ARRAYEXPRESS_PLATFORM",
"commonName" : "ArrayExpress Platform",
"homepage" : "https://www.ebi.ac.uk/arrayexpress/",
"registryIdentifier" : "MIR:00000294",
"uris" : [ "urn:miriam:arrayexpress.platform", "http://identifiers.org/arrayexpress.platform/", "http://identifiers.org/arrayexpress.platform", "https://identifiers.org/arrayexpress.platform/", "https://identifiers.org/arrayexpress.platform" ]
}, {
"name" : "ARXIV",
"commonName" : "arXiv",
"homepage" : "https://arxiv.org/",
"registryIdentifier" : "MIR:00000035",
"uris" : [ "urn:miriam:arxiv", "urn:oai:arXiv.org", "http://identifiers.org/arxiv/", "http://identifiers.org/arxiv", "https://identifiers.org/arxiv/", "https://identifiers.org/arxiv" ]
}, {
"name" : "ASAP",
"commonName" : "ASAP",
"homepage" : "http://asap.ahabs.wisc.edu/asap/home.php",
"registryIdentifier" : "MIR:00000283",
"uris" : [ "urn:miriam:asap", "http://identifiers.org/asap/", "http://identifiers.org/asap", "https://identifiers.org/asap/", "https://identifiers.org/asap" ]
}, {
"name" : "ASPGD_LOCUS",
"commonName" : "AspGD Locus",
"homepage" : "http://www.aspgd.org/",
"registryIdentifier" : "MIR:00000412",
"uris" : [ "urn:miriam:aspgd.locus", "http://identifiers.org/aspgd.locus/", "http://identifiers.org/aspgd.locus", "https://identifiers.org/aspgd.locus/", "https://identifiers.org/aspgd.locus" ]
}, {
"name" : "ASPGD_PROTEIN",
"commonName" : "AspGD Protein",
"homepage" : "http://www.aspgd.org/",
"registryIdentifier" : "MIR:00000413",
"uris" : [ "urn:miriam:aspgd.protein", "http://identifiers.org/aspgd.protein/", "http://identifiers.org/aspgd.protein", "https://identifiers.org/aspgd.protein/", "https://identifiers.org/aspgd.protein" ]
}, {
"name" : "ATCC",
"commonName" : "ATCC",
"homepage" : "http://www.atcc.org/",
"registryIdentifier" : "MIR:00000284",
"uris" : [ "urn:miriam:atcc", "http://identifiers.org/atcc/", "http://identifiers.org/atcc", "https://identifiers.org/atcc/", "https://identifiers.org/atcc" ]
}, {
"name" : "AUTDB",
"commonName" : "AutDB",
"homepage" : "http://autism.mindspec.org/autdb/",
"registryIdentifier" : "MIR:00000415",
"uris" : [ "urn:miriam:autdb", "http://identifiers.org/autdb/", "http://identifiers.org/autdb", "https://identifiers.org/autdb/", "https://identifiers.org/autdb" ]
}, {
"name" : "BACMAP_BIOGRAPHY",
"commonName" : "BacMap Biography",
"homepage" : "http://bacmap.wishartlab.com/",
"registryIdentifier" : "MIR:00000361",
"uris" : [ "urn:miriam:bacmap.biog", "http://identifiers.org/bacmap.biog/", "http://identifiers.org/bacmap.biog", "https://identifiers.org/bacmap.biog/", "https://identifiers.org/bacmap.biog" ]
}, {
"name" : "BACMAP_MAP",
"commonName" : "BacMap Map",
"homepage" : "http://bacmap.wishartlab.com/",
"registryIdentifier" : "MIR:00000416",
"uris" : [ "urn:miriam:bacmap.map", "http://identifiers.org/bacmap.map/", "http://identifiers.org/bacmap.map", "https://identifiers.org/bacmap.map/", "https://identifiers.org/bacmap.map" ]
}, {
"name" : "BDGP_EST",
"commonName" : "BDGP EST",
"homepage" : "https://www.ncbi.nlm.nih.gov/dbEST/index.html",
"registryIdentifier" : "MIR:00000285",
"uris" : [ "urn:miriam:bdgp.est", "http://identifiers.org/bdgp.est/", "http://identifiers.org/bdgp.est", "https://identifiers.org/bdgp.est/", "https://identifiers.org/bdgp.est" ]
}, {
"name" : "BDGP_INSERTION_DB",
"commonName" : "BDGP insertion DB",
"homepage" : "http://flypush.imgen.bcm.tmc.edu/pscreen/",
"registryIdentifier" : "MIR:00000156",
"uris" : [ "urn:miriam:bdgp.insertion", "http://identifiers.org/bdgp.insertion/", "http://identifiers.org/bdgp.insertion", "https://identifiers.org/bdgp.insertion/", "https://identifiers.org/bdgp.insertion" ]
}, {
"name" : "BEETLEBASE",
"commonName" : "BeetleBase",
"homepage" : "http://beetlebase.org/",
"registryIdentifier" : "MIR:00000157",
"uris" : [ "urn:miriam:beetlebase", "http://identifiers.org/beetlebase/", "http://identifiers.org/beetlebase", "https://identifiers.org/beetlebase/", "https://identifiers.org/beetlebase" ]
}, {
"name" : "BGEE_FAMILY",
"commonName" : "Bgee family",
"homepage" : "http://bgee.unil.ch/bgee/bgee",
"registryIdentifier" : "MIR:00000417",
"uris" : [ "urn:miriam:bgee.family", "http://identifiers.org/bgee.family/", "http://identifiers.org/bgee.family", "https://identifiers.org/bgee.family/", "https://identifiers.org/bgee.family" ]
}, {
"name" : "BGEE_GENE",
"commonName" : "Bgee gene",
"homepage" : "https://bgee.org/",
"registryIdentifier" : "MIR:00000418",
"uris" : [ "urn:miriam:bgee.gene", "http://identifiers.org/bgee.gene/", "http://identifiers.org/bgee.gene", "https://identifiers.org/bgee.gene/", "https://identifiers.org/bgee.gene" ]
}, {
"name" : "BGEE_ORGAN",
"commonName" : "Bgee organ",
"homepage" : "http://bgee.unil.ch/bgee/bgee",
"registryIdentifier" : "MIR:00000420",
"uris" : [ "urn:miriam:bgee.organ", "http://identifiers.org/bgee.organ/", "http://identifiers.org/bgee.organ", "https://identifiers.org/bgee.organ/", "https://identifiers.org/bgee.organ" ]
}, {
"name" : "BGEE_STAGE",
"commonName" : "Bgee stage",
"homepage" : "http://bgee.unil.ch/bgee/bgee",
"registryIdentifier" : "MIR:00000419",
"uris" : [ "urn:miriam:bgee.stage", "http://identifiers.org/bgee.stage/", "http://identifiers.org/bgee.stage", "https://identifiers.org/bgee.stage/", "https://identifiers.org/bgee.stage" ]
}, {
"name" : "BiGG_COMPARTMENT",
"commonName" : "BiGG Compartment",
"homepage" : "http://bigg.ucsd.edu/compartments/",
"registryIdentifier" : "MIR:00000555",
"uris" : [ "urn:miriam:bigg.compartment", "http://identifiers.org/bigg.compartment/", "http://identifiers.org/bigg.compartment", "https://identifiers.org/bigg.compartment/", "https://identifiers.org/bigg.compartment" ]
}, {
"name" : "BiGG_METABOLITE",
"commonName" : "BiGG Metabolite",
"homepage" : "http://bigg.ucsd.edu/universal/metabolites",
"registryIdentifier" : "MIR:00000556",
"uris" : [ "urn:miriam:bigg.metabolite", "http://identifiers.org/bigg.metabolite/", "http://identifiers.org/bigg.metabolite", "https://identifiers.org/bigg.metabolite/", "https://identifiers.org/bigg.metabolite" ]
}, {
"name" : "BiGG_REACTIONS",
"commonName" : "BiGG Reaction",
"homepage" : "http://bigg.ucsd.edu/universal/reactions",
"registryIdentifier" : "MIR:00000557",
"uris" : [ "urn:miriam:bigg.reaction", "http://identifiers.org/bigg.reaction/", "http://identifiers.org/bigg.reaction", "https://identifiers.org/bigg.reaction/", "https://identifiers.org/bigg.reaction" ]
}, {
"name" : "BINDINGDB",
"commonName" : "BindingDB",
"homepage" : "https://www.bindingdb.org",
"registryIdentifier" : "MIR:00000264",
"uris" : [ "urn:miriam:bindingDB", "http://identifiers.org/bindingdb/", "http://identifiers.org/bindingdb", "https://identifiers.org/bindingdb/", "https://identifiers.org/bindingdb" ]
}, {
"name" : "BIOCARTA_PATHWAY",
"commonName" : "BioCarta Pathway",
"homepage" : "https://www.biocarta.com/",
"registryIdentifier" : "MIR:00000421",
"uris" : [ "urn:miriam:biocarta.pathway", "http://identifiers.org/biocarta.pathway/", "http://identifiers.org/biocarta.pathway", "https://identifiers.org/biocarta.pathway/", "https://identifiers.org/biocarta.pathway" ]
}, {
"name" : "BIOCATALOGUE",
"commonName" : "BioCatalogue",
"homepage" : "https://www.biocatalogue.org/",
"registryIdentifier" : "MIR:00000140",
"uris" : [ "urn:miriam:biocatalogue.service", "http://identifiers.org/biocatalogue.service/", "http://identifiers.org/biocatalogue.service", "https://identifiers.org/biocatalogue.service/", "https://identifiers.org/biocatalogue.service" ]
}, {
"name" : "BIOCYC",
"commonName" : "BioCyc",
"homepage" : "http://biocyc.org",
"registryIdentifier" : "MIR:00000194",
"uris" : [ "urn:miriam:biocyc", "http://identifiers.org/biocyc/", "http://identifiers.org/biocyc", "https://identifiers.org/biocyc/", "https://identifiers.org/biocyc" ]
}, {
"name" : "BIOGRID",
"commonName" : "BioGRID",
"homepage" : "http://thebiogrid.org/",
"registryIdentifier" : "MIR:00000058",
"uris" : [ "urn:miriam:biogrid", "http://identifiers.org/biogrid/", "http://identifiers.org/biogrid", "https://identifiers.org/biogrid/", "https://identifiers.org/biogrid" ]
}, {
"name" : "BIOKC",
"commonName" : "BioKC",
"homepage" : "https://biokb.lcsb.uni.lu/",
"registryIdentifier" : "MIR:00000995",
"uris" : [ "http://identifiers.org/biokc", "http://identifiers.org/biokc/", "https://identifiers.org/biokc", "https://identifiers.org/biokc/" ]
}, {
"name" : "BIOMODELS_DATABASE",
"commonName" : "BioModels Database",
"homepage" : "https://www.ebi.ac.uk/biomodels/",
"registryIdentifier" : "MIR:00000007",
"uris" : [ "urn:miriam:biomodels.db", "http://identifiers.org/biomodels.db/", "http://identifiers.org/biomodels.db", "https://identifiers.org/biomodels.db/", "https://identifiers.org/biomodels.db" ]
}, {
"name" : "BIONUMBERS",
"commonName" : "BioNumbers",
"homepage" : "https://bionumbers.hms.harvard.edu",
"registryIdentifier" : "MIR:00000101",
"uris" : [ "urn:miriam:bionumbers", "http://identifiers.org/bionumbers/", "http://identifiers.org/bionumbers", "https://identifiers.org/bionumbers/", "https://identifiers.org/bionumbers" ]
}, {
"name" : "BIOPORTAL",
"commonName" : "BioPortal",
"homepage" : "http://bioportal.bioontology.org/",
"registryIdentifier" : "MIR:00000187",
"uris" : [ "urn:miriam:bioportal", "http://identifiers.org/bioportal/", "http://identifiers.org/bioportal", "https://identifiers.org/bioportal/", "https://identifiers.org/bioportal" ]
}, {
"name" : "BIOPROJECT",
"commonName" : "BioProject",
"homepage" : "http://trace.ddbj.nig.ac.jp/bioproject/",
"registryIdentifier" : "MIR:00000349",
"uris" : [ "urn:miriam:bioproject", "http://identifiers.org/bioproject/", "http://identifiers.org/bioproject", "https://identifiers.org/bioproject/", "https://identifiers.org/bioproject" ]
}, {
"name" : "BIOSAMPLE",
"commonName" : "BioSample",
"homepage" : "https://www.ebi.ac.uk/biosamples/",
"registryIdentifier" : "MIR:00000350",
"uris" : [ "urn:miriam:biosample", "http://identifiers.org/biosample/", "http://identifiers.org/biosample", "https://identifiers.org/biosample/", "https://identifiers.org/biosample" ]
}, {
"name" : "BIOSYSTEMS",
"commonName" : "BioSystems",
"homepage" : "https://www.ncbi.nlm.nih.gov/biosystems/",
"registryIdentifier" : "MIR:00000097",
"uris" : [ "urn:miriam:biosystems", "http://identifiers.org/biosystems/", "http://identifiers.org/biosystems", "https://identifiers.org/biosystems/", "https://identifiers.org/biosystems" ]
}, {
"name" : "BITTERDB_COMPOUND",
"commonName" : "BitterDB Compound",
"homepage" : "http://bitterdb.agri.huji.ac.il/dbbitter.php",
"registryIdentifier" : "MIR:00000348",
"uris" : [ "urn:miriam:bitterdb.cpd", "http://identifiers.org/bitterdb.cpd/", "http://identifiers.org/bitterdb.cpd", "https://identifiers.org/bitterdb.cpd/", "https://identifiers.org/bitterdb.cpd" ]
}, {
"name" : "BITTERDB_RECEPTOR",
"commonName" : "BitterDB Receptor",
"homepage" : "http://bitterdb.agri.huji.ac.il/dbbitter.php",
"registryIdentifier" : "MIR:00000347",
"uris" : [ "urn:miriam:bitterdb.rec", "http://identifiers.org/bitterdb.rec/", "http://identifiers.org/bitterdb.rec", "https://identifiers.org/bitterdb.rec/", "https://identifiers.org/bitterdb.rec" ]
}, {
"name" : "BOLD_TAXONOMY",
"commonName" : "BOLD Taxonomy",
"homepage" : "http://www.boldsystems.org/",
"registryIdentifier" : "MIR:00000158",
"uris" : [ "urn:miriam:bold.taxonomy", "http://identifiers.org/bold.taxonomy/", "http://identifiers.org/bold.taxonomy", "https://identifiers.org/bold.taxonomy/", "https://identifiers.org/bold.taxonomy" ]
}, {
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}, {
"name" : "DICTYBASE_GENE",
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}, {
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}, {
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}, {
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}, {
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}, {
"name" : "DPV",
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}, {
"name" : "DRAGONDB_ALLELE",
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}, {
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}, {
"name" : "DRAGONDB_LOCUS",
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"uris" : [ "urn:miriam:dragondb.locus", "http://identifiers.org/dragondb.locus/", "http://identifiers.org/dragondb.locus", "https://identifiers.org/dragondb.locus/", "https://identifiers.org/dragondb.locus" ]
}, {
"name" : "DRAGONDB_PROTEIN",
"commonName" : "DragonDB Protein",
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"registryIdentifier" : "MIR:00000298",
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}, {
"name" : "DRSC",
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"registryIdentifier" : "MIR:00000367",
"uris" : [ "urn:miriam:drsc", "http://identifiers.org/drsc/", "http://identifiers.org/drsc", "https://identifiers.org/drsc/", "https://identifiers.org/drsc" ]
}, {
"name" : "DRUGBANK",
"commonName" : "DrugBank",
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"uris" : [ "urn:miriam:drugbank", "http://identifiers.org/drugbank/", "http://identifiers.org/drugbank", "https://identifiers.org/drugbank/", "https://identifiers.org/drugbank" ]
}, {
"name" : "DRUGBANK_TARGET_V4",
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"registryIdentifier" : "MIR:00000528",
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}, {
"name" : "EC",
"commonName" : "Enzyme Nomenclature",
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"registryIdentifier" : "MIR:00000004",
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}, {
"name" : "ECHOBASE",
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"registryIdentifier" : "MIR:00000200",
"uris" : [ "urn:miriam:echobase", "http://identifiers.org/echobase/", "http://identifiers.org/echobase", "https://identifiers.org/echobase/", "https://identifiers.org/echobase" ]
}, {
"name" : "ECO",
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"registryIdentifier" : "MIR:00000055",
"uris" : [ "urn:miriam:obo.eco", "urn:miriam:eco", "http://identifiers.org/eco/", "http://identifiers.org/obo.eco/", "http://identifiers.org/ECO", "https://identifiers.org/eco/", "https://identifiers.org/obo.eco/", "https://identifiers.org/ECO" ]
}, {
"name" : "ECOGENE",
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"registryIdentifier" : "MIR:00000163",
"uris" : [ "urn:miriam:ecogene", "http://identifiers.org/ecogene/", "http://identifiers.org/ecogene", "https://identifiers.org/ecogene/", "https://identifiers.org/ecogene" ]
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"name" : "ECOLIWIKI",
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}, {
"name" : "EDAM_ONTOLOGY",
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}, {
"name" : "EGGNOG",
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"homepage" : "http://eggnog.embl.de/version_3.0/",
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}, {
"name" : "ELM",
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"registryIdentifier" : "MIR:00000250",
"uris" : [ "urn:miriam:elm", "http://identifiers.org/elm/", "http://identifiers.org/elm", "https://identifiers.org/elm/", "https://identifiers.org/elm" ]
}, {
"name" : "ENA",
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"uris" : [ "urn:miriam:ena.embl", "http://identifiers.org/ena.embl/", "http://identifiers.org/ena.embl", "https://identifiers.org/ena.embl/", "https://identifiers.org/ena.embl" ]
}, {
"name" : "ENSEMBL",
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"uris" : [ "urn:miriam:ensembl", "http://identifiers.org/ensembl/", "http://identifiers.org/ensembl.gene/", "http://identifiers.org/ensembl", "https://identifiers.org/ensembl/", "https://identifiers.org/ensembl.gene/", "https://identifiers.org/ensembl" ]
}, {
"name" : "ENSEMBL_BACTERIA",
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"registryIdentifier" : "MIR:00000202",
"uris" : [ "urn:miriam:ensembl.bacteria", "http://identifiers.org/ensembl.bacteria/", "http://identifiers.org/ensembl.bacteria", "https://identifiers.org/ensembl.bacteria/", "https://identifiers.org/ensembl.bacteria" ]
}, {
"name" : "ENSEMBL_FUNGI",
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"homepage" : "https://fungi.ensembl.org/",
"registryIdentifier" : "MIR:00000206",
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}, {
"name" : "ENSEMBL_METAZOA",
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"homepage" : "https://metazoa.ensembl.org/",
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"uris" : [ "urn:miriam:ensembl.metazoa", "http://identifiers.org/ensembl.metazoa/", "http://identifiers.org/ensembl.metazoa", "https://identifiers.org/ensembl.metazoa/", "https://identifiers.org/ensembl.metazoa" ]
}, {
"name" : "ENSEMBL_PLANTS",
"commonName" : "Ensembl Plants",
"homepage" : "http://plants.ensembl.org/",
"registryIdentifier" : "MIR:00000205",
"uris" : [ "urn:miriam:ensembl.plant", "http://identifiers.org/ensembl.plant/", "http://identifiers.org/ensembl.plant", "https://identifiers.org/ensembl.plant/", "https://identifiers.org/ensembl.plant" ]
}, {
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"registryIdentifier" : "MIR:00000203",
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}, {
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}, {
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"registryIdentifier" : "MIR:00000727",
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}, {
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}, {
"name" : "EU_CLINICAL_TRIALS",
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}, {
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"registryIdentifier" : "MIR:00000548",
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}, {
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}, {
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}, {
"name" : "EUROPEAN_GENOME_PHENOME_ARCHIVE_STUDY",
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"registryIdentifier" : "MIR:00000511",
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}, {
"name" : "FMA",
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"uris" : [ "urn:miriam:fma", "urn:miriam:obo.fma", "http://identifiers.org/fma/", "http://identifiers.org/FMA", "https://identifiers.org/fma/", "https://identifiers.org/FMA" ]
}, {
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"registryIdentifier" : "MIR:00000530",
"uris" : [ "urn:miriam:foodb.compound", "http://identifiers.org/foodb.compound/", "http://identifiers.org/foodb.compound", "https://identifiers.org/foodb.compound/", "https://identifiers.org/foodb.compound" ]
}, {
"name" : "F_SNP",
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"registryIdentifier" : "MIR:00000496",
"uris" : [ "urn:miriam:fsnp", "http://identifiers.org/fsnp/", "http://identifiers.org/fsnp", "https://identifiers.org/fsnp/", "https://identifiers.org/fsnp" ]
}, {
"name" : "FUNCBASE_FLY",
"commonName" : "FuncBase Fly",
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"registryIdentifier" : "MIR:00000461",
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}, {
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"commonName" : "FuncBase Human",
"homepage" : "http://func.mshri.on.ca/human/",
"registryIdentifier" : "MIR:00000462",
"uris" : [ "urn:miriam:funcbase.human", "http://identifiers.org/funcbase.human/", "http://identifiers.org/funcbase.human", "https://identifiers.org/funcbase.human/", "https://identifiers.org/funcbase.human" ]
}, {
"name" : "FUNCBASE_MOUSE",
"commonName" : "FuncBase Mouse",
"homepage" : "http://func.mshri.on.ca/mouse/",
"registryIdentifier" : "MIR:00000463",
"uris" : [ "urn:miriam:funcbase.mouse", "http://identifiers.org/funcbase.mouse/", "http://identifiers.org/funcbase.mouse", "https://identifiers.org/funcbase.mouse/", "https://identifiers.org/funcbase.mouse" ]
}, {
"name" : "FUNCBASE_YEAST",
"commonName" : "FuncBase Yeast",
"homepage" : "http://func.mshri.on.ca/yeast",
"registryIdentifier" : "MIR:00000464",
"uris" : [ "urn:miriam:funcbase.yeast", "http://identifiers.org/funcbase.yeast/", "http://identifiers.org/funcbase.yeast", "https://identifiers.org/funcbase.yeast/", "https://identifiers.org/funcbase.yeast" ]
}, {
"name" : "FUNGIDB",
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"homepage" : "https://fungidb.org/fungidb",
"registryIdentifier" : "MIR:00000365",
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}, {
"name" : "FLYBASE",
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"registryIdentifier" : "MIR:00000030",
"uris" : [ "urn:miriam:fb", "urn:miriam:flybase", "http://identifiers.org/fb/", "http://identifiers.org/fb", "https://identifiers.org/fb/", "https://identifiers.org/fb" ]
}, {
"name" : "GABI",
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"homepage" : "http://www.gabipd.org/",
"registryIdentifier" : "MIR:00000164",
"uris" : [ "urn:miriam:gabi", "http://identifiers.org/gabi/", "http://identifiers.org/gabi", "https://identifiers.org/gabi/", "https://identifiers.org/gabi" ]
}, {
"name" : "GENATLAS",
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"registryIdentifier" : "MIR:00000208",
"uris" : [ "urn:miriam:genatlas", "http://identifiers.org/genatlas/", "http://identifiers.org/genatlas", "https://identifiers.org/genatlas/", "https://identifiers.org/genatlas" ]
}, {
"name" : "GENECARDS",
"commonName" : "GeneCards",
"homepage" : "http://www.genecards.org/",
"registryIdentifier" : "MIR:00000323",
"uris" : [ "urn:miriam:genecards", "http://identifiers.org/genecards/", "http://identifiers.org/genecards", "https://identifiers.org/genecards/", "https://identifiers.org/genecards" ]
}, {
"name" : "GENE_DB",
"commonName" : "GeneDB",
"homepage" : "https://www.genedb.org/",
"registryIdentifier" : "MIR:00000106",
"uris" : [ "urn:miriam:genedb", "http://identifiers.org/genedb/", "http://identifiers.org/genedb", "https://identifiers.org/genedb/", "https://identifiers.org/genedb" ]
}, {
"name" : "GENEFARM",
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"homepage" : "http://urgi.versailles.inra.fr/Genefarm/",
"registryIdentifier" : "MIR:00000211",
"uris" : [ "urn:miriam:genefarm", "http://identifiers.org/genefarm/", "http://identifiers.org/genefarm", "https://identifiers.org/genefarm/", "https://identifiers.org/genefarm" ]
}, {
"name" : "GENETREE",
"commonName" : "GeneTree",
"homepage" : "http://www.ensembl.org/",
"registryIdentifier" : "MIR:00000214",
"uris" : [ "urn:miriam:genetree", "http://identifiers.org/genetree/", "http://identifiers.org/genetree", "https://identifiers.org/genetree/", "https://identifiers.org/genetree" ]
}, {
"name" : "GENE_WIKI",
"commonName" : "Gene Wiki",
"homepage" : "http://en.wikipedia.org/wiki/Gene_Wiki",
"registryIdentifier" : "MIR:00000487",
"uris" : [ "urn:miriam:genewiki", "http://identifiers.org/genewiki/", "http://identifiers.org/genewiki", "https://identifiers.org/genewiki/", "https://identifiers.org/genewiki" ]
}, {
"name" : "GENPEPT",
"commonName" : "GenPept",
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"registryIdentifier" : "MIR:00000345",
"uris" : [ "urn:miriam:genpept", "http://identifiers.org/genpept/", "http://identifiers.org/genpept", "https://identifiers.org/genpept/", "https://identifiers.org/genpept" ]
}, {
"name" : "GENOME_PROPERTIES",
"commonName" : "Genome Properties",
"homepage" : "https://www.ebi.ac.uk/interpro/genomeproperties/",
"registryIdentifier" : "MIR:00000443",
"uris" : [ "urn:miriam:genprop", "http://identifiers.org/genprop/", "http://identifiers.org/genprop", "https://identifiers.org/genprop/", "https://identifiers.org/genprop" ]
}, {
"name" : "GENOMIC_DATA_COMMONS_DATA_PORTAL",
"commonName" : "Genomic Data Commons Data Portal",
"homepage" : "https://gdc.cancer.gov/",
"registryIdentifier" : "MIR:00000604",
"uris" : [ "http://identifiers.org/gdc/", "http://identifiers.org/gdc", "https://identifiers.org/gdc/", "https://identifiers.org/gdc" ]
}, {
"name" : "GEO",
"commonName" : "GEO",
"homepage" : "https://www.ncbi.nlm.nih.gov/geo/",
"registryIdentifier" : "MIR:00000054",
"uris" : [ "urn:miriam:geo", "http://identifiers.org/geo/", "http://identifiers.org/geo", "https://identifiers.org/geo/", "https://identifiers.org/geo" ]
}, {
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}, {
"name" : "GLIDA_GPCR",
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}, {
"name" : "GLIDA_LIGAND",
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}, {
"name" : "GLYCOEPITOPE",
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}, {
"name" : "GLYCOMEDB",
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}, {
"name" : "GO",
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}, {
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}, {
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}, {
"name" : "GOLD_GENOME",
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}, {
"name" : "GOLD_METADATA",
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"uris" : [ "urn:miriam:gold.meta", "http://identifiers.org/gold.meta/", "http://identifiers.org/gold.meta", "https://identifiers.org/gold.meta/", "https://identifiers.org/gold.meta" ]
}, {
"name" : "GOOGLE_PATENTS",
"commonName" : "Google Patents",
"homepage" : "https://www.google.com/patents/",
"registryIdentifier" : "MIR:00000537",
"uris" : [ "urn:miriam:google.patent", "http://identifiers.org/google.patent/", "http://identifiers.org/google.patent", "https://identifiers.org/google.patent/", "https://identifiers.org/google.patent" ]
}, {
"name" : "GOLM_METABOLOME_DATABASE",
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}, {
"name" : "GOLM_METABOLOME_DATABASE_ANALYTE",
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}, {
"name" : "GOLM_METABOLOME_DATABASE_GC_MS_SPECTRA",
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"registryIdentifier" : "MIR:00000424",
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}, {
"name" : "GOLM_METABOLOME_DATABASE_PROFILE",
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}, {
"name" : "GOLM_METABOLOME_DATABASE_REFERENCE_SUBSTANCE",
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"registryIdentifier" : "MIR:00000425",
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}, {
"name" : "GPCRDB",
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"registryIdentifier" : "MIR:00000212",
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}, {
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}, {
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"registryIdentifier" : "MIR:00000181",
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}, {
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"registryIdentifier" : "MIR:00000184",
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}, {
"name" : "GRAMENE_TAXONOMY",
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"registryIdentifier" : "MIR:00000183",
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}, {
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"registryIdentifier" : "MIR:00000165",
"uris" : [ "urn:miriam:greengenes", "http://identifiers.org/greengenes/", "http://identifiers.org/greengenes", "https://identifiers.org/greengenes/", "https://identifiers.org/greengenes" ]
}, {
"name" : "GRIN_PLANT_TAXONOMY",
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"uris" : [ "urn:miriam:grin.taxonomy", "http://identifiers.org/grin.taxonomy/", "http://identifiers.org/grin.taxonomy", "https://identifiers.org/grin.taxonomy/", "https://identifiers.org/grin.taxonomy" ]
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"registryIdentifier" : "MIR:00000495",
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}, {
"name" : "GWAS_CENTRAL_MARKER",
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}, {
"name" : "GWAS_CENTRAL_PHENOTYPE",
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}, {
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"name" : "GXA_GENE",
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}, {
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"uris" : [ "urn:miriam:hamap", "http://identifiers.org/hamap/", "http://identifiers.org/hamap", "https://identifiers.org/hamap/", "https://identifiers.org/hamap" ]
}, {
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"registryIdentifier" : "MIR:00000207",
"uris" : [ "urn:miriam:hcvdb", "http://identifiers.org/hcvdb/", "http://identifiers.org/hcvdb", "https://identifiers.org/hcvdb/", "https://identifiers.org/hcvdb" ]
}, {
"name" : "HGMD",
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}, {
"name" : "HGNC",
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}, {
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}, {
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"uris" : [ "urn:miriam:hinv.protein", "http://identifiers.org/hinv.protein/", "http://identifiers.org/hinv.protein", "https://identifiers.org/hinv.protein/", "https://identifiers.org/hinv.protein" ]
}, {
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"homepage" : "http://h-invitational.jp/hinv/ahg-db/index.jsp",
"registryIdentifier" : "MIR:00000168",
"uris" : [ "urn:miriam:hinv.transcript", "http://identifiers.org/hinv.transcript/", "http://identifiers.org/hinv.transcript", "https://identifiers.org/hinv.transcript/", "https://identifiers.org/hinv.transcript" ]
}, {
"name" : "HMDB",
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"registryIdentifier" : "MIR:00000051",
"uris" : [ "urn:miriam:hmdb", "http://identifiers.org/hmdb/", "http://identifiers.org/hmdb", "https://identifiers.org/hmdb/", "https://identifiers.org/hmdb" ]
}, {
"name" : "HOGENOM",
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"uris" : [ "urn:miriam:hogenom", "http://identifiers.org/hogenom/", "http://identifiers.org/hogenom", "https://identifiers.org/hogenom/", "https://identifiers.org/hogenom" ]
}, {
"name" : "HOMD_SEQUENCE_METAINFORMATION",
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"registryIdentifier" : "MIR:00000170",
"uris" : [ "urn:miriam:homd.seq", "http://identifiers.org/homd.seq/", "http://identifiers.org/homd.seq", "https://identifiers.org/homd.seq/", "https://identifiers.org/homd.seq" ]
}, {
"name" : "HOMD_TAXONOMY",
"commonName" : "HOMD Taxonomy",
"homepage" : "http://www.homd.org/index.php",
"registryIdentifier" : "MIR:00000171",
"uris" : [ "urn:miriam:homd.taxon", "http://identifiers.org/homd.taxon/", "http://identifiers.org/homd.taxon", "https://identifiers.org/homd.taxon/", "https://identifiers.org/homd.taxon" ]
}, {
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"registryIdentifier" : "MIR:00000497",
"uris" : [ "urn:miriam:hdr", "http://identifiers.org/hdr/", "http://identifiers.org/hdr", "https://identifiers.org/hdr/", "https://identifiers.org/hdr" ]
}, {
"name" : "HOMOLOGENE",
"commonName" : "HomoloGene",
"homepage" : "https://www.ncbi.nlm.nih.gov/homologene/",
"registryIdentifier" : "MIR:00000275",
"uris" : [ "urn:miriam:homologene", "http://identifiers.org/homologene/", "http://identifiers.org/homologene", "https://identifiers.org/homologene/", "https://identifiers.org/homologene" ]
}, {
"name" : "HOVERGEN",
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"registryIdentifier" : "MIR:00000074",
"uris" : [ "urn:miriam:hovergen", "http://identifiers.org/hovergen/", "http://identifiers.org/hovergen", "https://identifiers.org/hovergen/", "https://identifiers.org/hovergen" ]
}, {
"name" : "HPA",
"commonName" : "HPA",
"homepage" : "http://www.proteinatlas.org/",
"registryIdentifier" : "MIR:00000336",
"uris" : [ "urn:miriam:hpa", "http://identifiers.org/hpa/", "http://identifiers.org/hpa", "https://identifiers.org/hpa/", "https://identifiers.org/hpa" ]
}, {
"name" : "HPRD",
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"homepage" : "http://www.hprd.org/",
"registryIdentifier" : "MIR:00000377",
"uris" : [ "urn:miriam:hprd", "http://identifiers.org/hprd/", "http://identifiers.org/hprd", "https://identifiers.org/hprd/", "https://identifiers.org/hprd" ]
}, {
"name" : "HSSP",
"commonName" : "HSSP",
"homepage" : "http://swift.cmbi.kun.nl/swift/hssp/",
"registryIdentifier" : "MIR:00000215",
"uris" : [ "urn:miriam:hssp", "http://identifiers.org/hssp/", "http://identifiers.org/hssp", "https://identifiers.org/hssp/", "https://identifiers.org/hssp" ]
}, {
"name" : "HUGE",
"commonName" : "HUGE",
"homepage" : "http://www.kazusa.or.jp/huge/",
"registryIdentifier" : "MIR:00000263",
"uris" : [ "urn:miriam:huge", "http://identifiers.org/huge/", "http://identifiers.org/huge", "https://identifiers.org/huge/", "https://identifiers.org/huge" ]
}, {
"name" : "HUMAN_DISEASE_ONTOLOGY",
"commonName" : "Human Disease Ontology",
"homepage" : "http://bioportal.bioontology.org/ontologies/DOID",
"registryIdentifier" : "MIR:00000233",
"uris" : [ "urn:miriam:obo.do", "urn:miriam:doid", "http://identifiers.org/doid/", "http://identifiers.org/DOID", "https://identifiers.org/doid/", "https://identifiers.org/DOID" ]
}, {
"name" : "HUMAN_PHENOTYPE_ONTOLOGY",
"commonName" : "Human Phenotype Ontology",
"homepage" : "https://www.ebi.ac.uk/ols/ontologies/hp",
"registryIdentifier" : "MIR:00000571",
"uris" : [ "http://identifiers.org/hp/", "http://identifiers.org/HP", "https://identifiers.org/hp/", "https://identifiers.org/HP" ]
}, {
"name" : "HUMAN_PROTEOME_MAP_PEPTIDE",
"commonName" : "Human Proteome Map Peptide",
"homepage" : "http://www.humanproteomemap.org/index.php",
"registryIdentifier" : "MIR:00000527",
"uris" : [ "urn:miriam:hpm.peptide", "http://identifiers.org/hpm.peptide/", "http://identifiers.org/hpm.peptide", "https://identifiers.org/hpm.peptide/", "https://identifiers.org/hpm.peptide" ]
}, {
"name" : "HUMAN_PROTEOME_MAP_PROTEIN",
"commonName" : "Human Proteome Map Protein",
"homepage" : "http://www.humanproteomemap.org/index.php",
"registryIdentifier" : "MIR:00000526",
"uris" : [ "urn:miriam:hpm.protein", "http://identifiers.org/hpm.protein/", "http://identifiers.org/hpm.protein", "https://identifiers.org/hpm.protein/", "https://identifiers.org/hpm.protein" ]
}, {
"name" : "ICD",
"commonName" : "ICD",
"homepage" : "http://www.who.int/classifications/icd/en/",
"registryIdentifier" : "MIR:00000009",
"uris" : [ "urn:miriam:icd", "http://identifiers.org/icd/", "http://identifiers.org/icd", "https://identifiers.org/icd/", "https://identifiers.org/icd" ]
}, {
"name" : "ICEBERG_ELEMENT",
"commonName" : "ICEberg element",
"homepage" : "http://db-mml.sjtu.edu.cn/ICEberg/",
"registryIdentifier" : "MIR:00000469",
"uris" : [ "urn:miriam:iceberg.element", "http://identifiers.org/iceberg.element/", "http://identifiers.org/iceberg.element", "https://identifiers.org/iceberg.element/", "https://identifiers.org/iceberg.element" ]
}, {
"name" : "ICEBERG_FAMILY",
"commonName" : "ICEberg family",
"homepage" : "http://db-mml.sjtu.edu.cn/ICEberg/",
"registryIdentifier" : "MIR:00000470",
"uris" : [ "urn:miriam:iceberg.family", "http://identifiers.org/iceberg.family/", "http://identifiers.org/iceberg.family", "https://identifiers.org/iceberg.family/", "https://identifiers.org/iceberg.family" ]
}, {
"name" : "IDEAL",
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"homepage" : "http://www.ideal.force.cs.is.nagoya-u.ac.jp/IDEAL/",
"registryIdentifier" : "MIR:00000398",
"uris" : [ "urn:miriam:ideal", "http://identifiers.org/ideal/", "http://identifiers.org/ideal", "https://identifiers.org/ideal/", "https://identifiers.org/ideal" ]
}, {
"name" : "IDENTIFIERS_ORG_TERMS",
"commonName" : "Identifiers.org Terms",
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}, {
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}, {
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}, {
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}, {
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}, {
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}, {
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}, {
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}, {
"name" : "MI_R_BASE_MATURE_SEQUENCE",
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}, {
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}, {
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}, {
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}, {
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}, {
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}, {
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}, {
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}, {
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}, {
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}, {
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}, {
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}, {
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}, {
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}, {
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}, {
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}, {
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}, {
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}, {
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}, {
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"registryIdentifier" : "MIR:00000240",
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}, {
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}, {
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}, {
"name" : "NATIONAL_DRUG_CODE",
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}, {
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}, {
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}, {
"name" : "NCI_PATHWAY_INTERACTION_DATABASE_PATHWAY",
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}, {
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}, {
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}, {
"name" : "NEUROMORPHO",
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}, {
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}, {
"name" : "NEXTDB",
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}, {
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"registryIdentifier" : "MIR:00000236",
"uris" : [ "urn:miriam:nextprot", "http://identifiers.org/nextprot/", "http://identifiers.org/nextprot", "https://identifiers.org/nextprot/", "https://identifiers.org/nextprot" ]
}, {
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"registryIdentifier" : "MIR:00000305",
"uris" : [ "urn:miriam:niaest", "http://identifiers.org/niaest/", "http://identifiers.org/niaest", "https://identifiers.org/niaest/", "https://identifiers.org/niaest" ]
}, {
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"registryIdentifier" : "MIR:00000179",
"uris" : [ "urn:miriam:nbrc", "http://identifiers.org/nbrc/", "http://identifiers.org/nbrc", "https://identifiers.org/nbrc/", "https://identifiers.org/nbrc" ]
}, {
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"registryIdentifier" : "MIR:00000248",
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}, {
"name" : "NONCODE_V4_GENE",
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"registryIdentifier" : "MIR:00000480",
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}, {
"name" : "NONCODE_V4_TRANSCRIPT",
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"registryIdentifier" : "MIR:00000481",
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}, {
"name" : "NORINE",
"commonName" : "NORINE",
"homepage" : "http://bioinfo.lifl.fr/norine/",
"registryIdentifier" : "MIR:00000498",
"uris" : [ "urn:miriam:norine", "http://identifiers.org/norine/", "http://identifiers.org/norine", "https://identifiers.org/norine/", "https://identifiers.org/norine" ]
}, {
"name" : "NUCLEARDB",
"commonName" : "NucleaRDB",
"homepage" : "http://www.receptors.org/nucleardb/",
"registryIdentifier" : "MIR:00000356",
"uris" : [ "urn:miriam:nuclearbd", "http://identifiers.org/nuclearbd/", "http://identifiers.org/nuclearbd", "https://identifiers.org/nuclearbd/", "https://identifiers.org/nuclearbd" ]
}, {
"name" : "NUCLEOTIDE_SEQUENCE_DATABASE",
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"registryIdentifier" : "MIR:00000029",
"uris" : [ "urn:miriam:insdc", "http://identifiers.org/insdc/", "http://identifiers.org/insdc", "https://identifiers.org/insdc/", "https://identifiers.org/insdc" ]
}, {
"name" : "OBI",
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"homepage" : "https://www.ebi.ac.uk/ols/ontologies/obi/",
"registryIdentifier" : "MIR:00000127",
"uris" : [ "urn:miriam:obi", "urn:miriam:obo.obi", "http://identifiers.org/obi/", "http://identifiers.org/obi", "https://identifiers.org/obi/", "https://identifiers.org/obi" ]
}, {
"name" : "OMA_GROUP",
"commonName" : "OMA Group",
"homepage" : "https://omabrowser.org/cgi-bin/gateway.pl",
"registryIdentifier" : "MIR:00000343",
"uris" : [ "urn:miriam:oma.grp", "http://identifiers.org/oma.grp/", "http://identifiers.org/oma.grp", "https://identifiers.org/oma.grp/", "https://identifiers.org/oma.grp" ]
}, {
"name" : "OMA_PROTEIN",
"commonName" : "OMA Protein",
"homepage" : "https://omabrowser.org/cgi-bin/gateway.pl",
"registryIdentifier" : "MIR:00000342",
"uris" : [ "urn:miriam:oma.protein", "http://identifiers.org/oma.protein/", "http://identifiers.org/oma.protein", "https://identifiers.org/oma.protein/", "https://identifiers.org/oma.protein" ]
}, {
"name" : "ODOR_MOLECULES_DATABASE",
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"homepage" : "http://senselab.med.yale.edu/OdorDB",
"registryIdentifier" : "MIR:00000500",
"uris" : [ "urn:miriam:odor", "http://identifiers.org/odor/", "http://identifiers.org/odor", "https://identifiers.org/odor/", "https://identifiers.org/odor" ]
}, {
"name" : "OLFACTORY_RECEPTOR_DATABASE",
"commonName" : "Olfactory Receptor Database",
"homepage" : "http://senselab.med.yale.edu/OrDB/",
"registryIdentifier" : "MIR:00000499",
"uris" : [ "urn:miriam:ordb", "http://identifiers.org/ordb/", "http://identifiers.org/ordb", "https://identifiers.org/ordb/", "https://identifiers.org/ordb" ]
}, {
"name" : "OMIA",
"commonName" : "OMIA",
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"uris" : [ "urn:miriam:omia", "http://identifiers.org/omia/", "http://identifiers.org/omia", "https://identifiers.org/omia/", "https://identifiers.org/omia" ]
}, {
"name" : "OMIM",
"commonName" : "Online Mendelian Inheritance in Man",
"homepage" : "http://omim.org/",
"registryIdentifier" : "MIR:00000016",
"uris" : [ "urn:miriam:omim", "http://identifiers.org/mim/", "http://identifiers.org/mim", "https://identifiers.org/mim/", "https://identifiers.org/mim" ]
}, {
"name" : "OMIT",
"commonName" : "OMIT",
"homepage" : "https://www.ebi.ac.uk/ols/ontologies/omit/",
"registryIdentifier" : "MIR:00000605",
"uris" : [ "http://identifiers.org/omit/", "http://identifiers.org/omit", "https://identifiers.org/omit/", "https://identifiers.org/omit" ]
}, {
"name" : "ONTOLOGY_OF_PHYSICS_FOR_BIOLOGY",
"commonName" : "Ontology of Physics for Biology",
"homepage" : "http://bioportal.bioontology.org/ontologies/OPB",
"registryIdentifier" : "MIR:00000129",
"uris" : [ "urn:miriam:opb", "http://identifiers.org/opb/", "http://identifiers.org/opb", "https://identifiers.org/opb/", "https://identifiers.org/opb" ]
}, {
"name" : "OPM",
"commonName" : "OPM",
"homepage" : "http://opm.phar.umich.edu/",
"registryIdentifier" : "MIR:00000333",
"uris" : [ "urn:miriam:opm", "http://identifiers.org/opm/", "http://identifiers.org/opm", "https://identifiers.org/opm/", "https://identifiers.org/opm" ]
}, {
"name" : "ORCID",
"commonName" : "ORCID",
"homepage" : "https://orcid.org",
"registryIdentifier" : "MIR:00000382",
"uris" : [ "urn:miriam:orcid", "http://identifiers.org/orcid/", "http://identifiers.org/orcid", "https://identifiers.org/orcid/", "https://identifiers.org/orcid" ]
}, {
"name" : "ORIDB_SACCHAROMYCES",
"commonName" : "OriDB Saccharomyces",
"homepage" : "http://cerevisiae.oridb.org/index.php",
"registryIdentifier" : "MIR:00000369",
"uris" : [ "urn:miriam:oridb.sacch", "http://identifiers.org/oridb.sacch/", "http://identifiers.org/oridb.sacch", "https://identifiers.org/oridb.sacch/", "https://identifiers.org/oridb.sacch" ]
}, {
"name" : "ORIDB_SCHIZOSACCHAROMYCES",
"commonName" : "OriDB Schizosaccharomyces",
"homepage" : "http://pombe.oridb.org/index.php",
"registryIdentifier" : "MIR:00000368",
"uris" : [ "urn:miriam:oridb.schizo", "http://identifiers.org/oridb.schizo/", "http://identifiers.org/oridb.schizo", "https://identifiers.org/oridb.schizo/", "https://identifiers.org/oridb.schizo" ]
}, {
"name" : "ORPHANET",
"commonName" : "Orphanet",
"homepage" : "http://www.orpha.net/consor/",
"registryIdentifier" : "MIR:00000220",
"uris" : [ "urn:miriam:orphanet", "http://identifiers.org/orphanet/", "http://identifiers.org/orphanet", "https://identifiers.org/orphanet/", "https://identifiers.org/orphanet" ]
}, {
"name" : "ORPHANET_RARE_DISEASE_ONTOLOGY",
"commonName" : "Orphanet Rare Disease Ontology",
"homepage" : "https://www.ebi.ac.uk/ols/ontologies/ordo",
"registryIdentifier" : "MIR:00000532",
"uris" : [ "urn:miriam:orphanet.ordo", "http://identifiers.org/orphanet.ordo/", "http://identifiers.org/orphanet.ordo", "https://identifiers.org/orphanet.ordo/", "https://identifiers.org/orphanet.ordo" ]
}, {
"name" : "ORTHODB",
"commonName" : "OrthoDB",
"homepage" : "http://cegg.unige.ch/orthodb4",
"registryIdentifier" : "MIR:00000221",
"uris" : [ "urn:miriam:orthodb", "http://identifiers.org/orthodb/", "http://identifiers.org/orthodb", "https://identifiers.org/orthodb/", "https://identifiers.org/orthodb" ]
}, {
"name" : "ORYZABASE_GENE",
"commonName" : "Oryzabase Gene",
"homepage" : "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/",
"registryIdentifier" : "MIR:00000482",
"uris" : [ "urn:miriam:oryzabase.gene", "http://identifiers.org/oryzabase.gene/", "http://identifiers.org/oryzabase.gene", "https://identifiers.org/oryzabase.gene/", "https://identifiers.org/oryzabase.gene" ]
}, {
"name" : "ORYZABASE_MUTANT",
"commonName" : "Oryzabase Mutant",
"homepage" : "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/",
"registryIdentifier" : "MIR:00000483",
"uris" : [ "urn:miriam:oryzabase.mutant", "http://identifiers.org/oryzabase.mutant/", "http://identifiers.org/oryzabase.mutant", "https://identifiers.org/oryzabase.mutant/", "https://identifiers.org/oryzabase.mutant" ]
}, {
"name" : "ORYZABASE_STAGE",
"commonName" : "Oryzabase Stage",
"homepage" : "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/",
"registryIdentifier" : "MIR:00000485",
"uris" : [ "urn:miriam:oryzabase.stage", "http://identifiers.org/oryzabase.stage/", "http://identifiers.org/oryzabase.stage", "https://identifiers.org/oryzabase.stage/", "https://identifiers.org/oryzabase.stage" ]
}, {
"name" : "ORYZABASE_STRAIN",
"commonName" : "Oryzabase Strain",
"homepage" : "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/",
"registryIdentifier" : "MIR:00000484",
"uris" : [ "urn:miriam:oryzabase.strain", "http://identifiers.org/oryzabase.strain/", "http://identifiers.org/oryzabase.strain", "https://identifiers.org/oryzabase.strain/", "https://identifiers.org/oryzabase.strain" ]
}, {
"name" : "ORYZA_TAG_LINE",
"commonName" : "Oryza Tag Line",
"homepage" : "http://oryzatagline.cirad.fr/",
"registryIdentifier" : "MIR:00000486",
"uris" : [ "urn:miriam:otl", "http://identifiers.org/otl/", "http://identifiers.org/otl", "https://identifiers.org/otl/", "https://identifiers.org/otl" ]
}, {
"name" : "P3DB_PROTEIN",
"commonName" : "P3DB Protein",
"homepage" : "http://www.p3db.org/",
"registryIdentifier" : "MIR:00000501",
"uris" : [ "urn:miriam:p3db.protein", "http://identifiers.org/p3db.protein/", "http://identifiers.org/p3db.protein", "https://identifiers.org/p3db.protein/", "https://identifiers.org/p3db.protein" ]
}, {
"name" : "P3DB_SITE",
"commonName" : "P3DB Site",
"homepage" : "http://www.p3db.org/",
"registryIdentifier" : "MIR:00000502",
"uris" : [ "urn:miriam:p3db.site", "http://identifiers.org/p3db.site/", "http://identifiers.org/p3db.site", "https://identifiers.org/p3db.site/", "https://identifiers.org/p3db.site" ]
}, {
"name" : "PALEODB",
"commonName" : "PaleoDB",
"homepage" : "http://paleodb.org/",
"registryIdentifier" : "MIR:00000197",
"uris" : [ "urn:miriam:paleodb", "http://identifiers.org/paleodb/", "http://identifiers.org/paleodb", "https://identifiers.org/paleodb/", "https://identifiers.org/paleodb" ]
}, {
"name" : "PANTHER",
"commonName" : "PANTHER Family",
"homepage" : "http://www.pantherdb.org/",
"registryIdentifier" : "MIR:00000060",
"uris" : [ "urn:miriam:panther.family", "urn:miriam:panther", "http://identifiers.org/panther.family/", "http://identifiers.org/panther.family", "https://identifiers.org/panther.family/", "https://identifiers.org/panther.family" ]
}, {
"name" : "PANTHER_NODE",
"commonName" : "PANTHER Node",
"homepage" : "http://pantree.org/",
"registryIdentifier" : "MIR:00000374",
"uris" : [ "urn:miriam:panther.node", "http://identifiers.org/panther.node/", "http://identifiers.org/panther.node", "https://identifiers.org/panther.node/", "https://identifiers.org/panther.node" ]
}, {
"name" : "PANTHER_PATHWAY",
"commonName" : "PANTHER Pathway",
"homepage" : "http://www.pantherdb.org/",
"registryIdentifier" : "MIR:00000363",
"uris" : [ "urn:miriam:panther.pathway", "http://identifiers.org/panther.pathway/", "http://identifiers.org/panther.pathway", "https://identifiers.org/panther.pathway/", "https://identifiers.org/panther.pathway" ]
}, {
"name" : "PANTHER_PATHWAY_COMPONENT",
"commonName" : "PANTHER Pathway Component",
"homepage" : "http://www.pantherdb.org/",
"registryIdentifier" : "MIR:00000422",
"uris" : [ "urn:miriam:panther.pthcmp", "http://identifiers.org/panther.pthcmp/", "http://identifiers.org/panther.pthcmp", "https://identifiers.org/panther.pthcmp/", "https://identifiers.org/panther.pthcmp" ]
}, {
"name" : "PASS2",
"commonName" : "PASS2",
"homepage" : "http://caps.ncbs.res.in/pass2/",
"registryIdentifier" : "MIR:00000468",
"uris" : [ "urn:miriam:pass2", "http://identifiers.org/pass2/", "http://identifiers.org/pass2", "https://identifiers.org/pass2/", "https://identifiers.org/pass2" ]
}, {
"name" : "PATHWAY_ONTOLOGY",
"commonName" : "Pathway Ontology",
"homepage" : "http://rgd.mcw.edu/rgdweb/ontology/search.html",
"registryIdentifier" : "MIR:00000242",
"uris" : [ "urn:miriam:pw", "urn:miriam:obo.pw", "http://identifiers.org/pw/", "http://identifiers.org/PW", "https://identifiers.org/pw/", "https://identifiers.org/PW" ]
}, {
"name" : "PATHWAY_COMMONS",
"commonName" : "Pathway Commons",
"homepage" : "http://www.pathwaycommons.org/pc/",
"registryIdentifier" : "MIR:00000073",
"uris" : [ "urn:miriam:pathwaycommons", "http://identifiers.org/pathwaycommons/", "http://identifiers.org/pathwaycommons", "https://identifiers.org/pathwaycommons/", "https://identifiers.org/pathwaycommons" ]
}, {
"name" : "PATO",
"commonName" : "PATO",
"homepage" : "https://www.ebi.ac.uk/ols/ontologies/pato",
"registryIdentifier" : "MIR:00000112",
"uris" : [ "urn:miriam:pato", "urn:miriam:obo.pato", "http://identifiers.org/pato/", "http://identifiers.org/PATO", "https://identifiers.org/pato/", "https://identifiers.org/PATO" ]
}, {
"name" : "PAXDB_ORGANISM",
"commonName" : "PaxDb Organism",
"homepage" : "http://pax-db.org/",
"registryIdentifier" : "MIR:00000488",
"uris" : [ "urn:miriam:paxdb.organism", "http://identifiers.org/paxdb.organism/", "http://identifiers.org/paxdb.organism", "https://identifiers.org/paxdb.organism/", "https://identifiers.org/paxdb.organism" ]
}, {
"name" : "PAXDB_PROTEIN",
"commonName" : "PaxDb Protein",
"homepage" : "http://pax-db.org/",
"registryIdentifier" : "MIR:00000489",
"uris" : [ "urn:miriam:paxdb.protein", "http://identifiers.org/paxdb.protein/", "http://identifiers.org/paxdb.protein", "https://identifiers.org/paxdb.protein/", "https://identifiers.org/paxdb.protein" ]
}, {
"name" : "PAZAR_TRANSCRIPTION_FACTOR",
"commonName" : "Pazar Transcription Factor",
"homepage" : "http://www.pazar.info/",
"registryIdentifier" : "MIR:00000306",
"uris" : [ "urn:miriam:pazar", "http://identifiers.org/pazar/", "http://identifiers.org/pazar", "https://identifiers.org/pazar/", "https://identifiers.org/pazar" ]
}, {
"name" : "PDB",
"commonName" : "Protein Data Bank",
"homepage" : "http://www.pdbe.org/",
"registryIdentifier" : "MIR:00000020",
"uris" : [ "urn:miriam:pdb", "http://identifiers.org/pdb/", "http://identifiers.org/pdb", "https://identifiers.org/pdb/", "https://identifiers.org/pdb" ]
}, {
"name" : "PDB_CCD",
"commonName" : "Chemical Component Dictionary",
"homepage" : "https://www.ebi.ac.uk/pdbe-srv/pdbechem/",
"registryIdentifier" : "MIR:00000113",
"uris" : [ "urn:miriam:pdb-ccd", "http://identifiers.org/pdb-ccd/", "http://identifiers.org/pdb-ccd", "https://identifiers.org/pdb-ccd/", "https://identifiers.org/pdb-ccd" ]
}, {
"name" : "PEPTIDEATLAS",
"commonName" : "PeptideAtlas",
"homepage" : "http://www.peptideatlas.org/",
"registryIdentifier" : "MIR:00000053",
"uris" : [ "urn:miriam:peptideatlas", "http://identifiers.org/peptideatlas/", "http://identifiers.org/peptideatlas", "https://identifiers.org/peptideatlas/", "https://identifiers.org/peptideatlas" ]
}, {
"name" : "PEROXIBASE",
"commonName" : "Peroxibase",
"homepage" : "http://peroxibase.toulouse.inra.fr/",
"registryIdentifier" : "MIR:00000222",
"uris" : [ "urn:miriam:peroxibase", "http://identifiers.org/peroxibase/", "http://identifiers.org/peroxibase", "https://identifiers.org/peroxibase/", "https://identifiers.org/peroxibase" ]
}, {
"name" : "PFAM",
"commonName" : "Protein Family Database",
"homepage" : "http://pfam.xfam.org/",
"registryIdentifier" : "MIR:00000028",
"uris" : [ "urn:miriam:pfam", "http://identifiers.org/pfam/", "http://identifiers.org/pfam", "https://identifiers.org/pfam/", "https://identifiers.org/pfam" ]
}, {
"name" : "PHARM",
"commonName" : "PharmGKB Pathways",
"homepage" : "http://www.pharmgkb.org/",
"registryIdentifier" : "MIR:00000089",
"uris" : [ "urn:miriam:pharmgkb.pathways", "http://identifiers.org/pharmgkb.pathways/", "http://identifiers.org/pharmgkb.pathways", "https://identifiers.org/pharmgkb.pathways/", "https://identifiers.org/pharmgkb.pathways" ]
}, {
"name" : "PHARMGKB_DISEASE",
"commonName" : "PharmGKB Disease",
"homepage" : "http://www.pharmgkb.org/",
"registryIdentifier" : "MIR:00000090",
"uris" : [ "urn:miriam:pharmgkb.disease", "http://identifiers.org/pharmgkb.disease/", "http://identifiers.org/pharmgkb.disease", "https://identifiers.org/pharmgkb.disease/", "https://identifiers.org/pharmgkb.disease" ]
}, {
"name" : "PHARMGKB_DRUG",
"commonName" : "PharmGKB Drug",
"homepage" : "http://www.pharmgkb.org/",
"registryIdentifier" : "MIR:00000091",
"uris" : [ "urn:miriam:pharmgkb.drug", "http://identifiers.org/pharmgkb.drug/", "http://identifiers.org/pharmgkb.drug", "https://identifiers.org/pharmgkb.drug/", "https://identifiers.org/pharmgkb.drug" ]
}, {
"name" : "PHARMGKB_GENE",
"commonName" : "PharmGKB Gene",
"homepage" : "http://www.pharmgkb.org/",
"registryIdentifier" : "MIR:00000245",
"uris" : [ "urn:miriam:pharmgkb.gene", "http://identifiers.org/pharmgkb.gene/", "http://identifiers.org/pharmgkb.gene", "https://identifiers.org/pharmgkb.gene/", "https://identifiers.org/pharmgkb.gene" ]
}, {
"name" : "PHENOL_EXPLORER",
"commonName" : "Phenol-Explorer",
"homepage" : "http://www.phenol-explorer.eu/foods/",
"registryIdentifier" : "MIR:00000268",
"uris" : [ "urn:miriam:phenolexplorer", "http://identifiers.org/phenolexplorer/", "http://identifiers.org/phenolexplorer", "https://identifiers.org/phenolexplorer/", "https://identifiers.org/phenolexplorer" ]
}, {
"name" : "PHOSPHOPOINT_KINASE",
"commonName" : "PhosphoPoint Kinase",
"homepage" : "http://kinase.bioinformatics.tw/",
"registryIdentifier" : "MIR:00000385",
"uris" : [ "urn:miriam:phosphopoint.kinase", "http://identifiers.org/phosphopoint.kinase/", "http://identifiers.org/phosphopoint.kinase", "https://identifiers.org/phosphopoint.kinase/", "https://identifiers.org/phosphopoint.kinase" ]
}, {
"name" : "PHOSPHOPOINT_PHOSPHOPROTEIN",
"commonName" : "PhosphoPoint Phosphoprotein",
"homepage" : "http://kinase.bioinformatics.tw/",
"registryIdentifier" : "MIR:00000386",
"uris" : [ "urn:miriam:phosphopoint.protein", "http://identifiers.org/phosphopoint.protein/", "http://identifiers.org/phosphopoint.protein", "https://identifiers.org/phosphopoint.protein/", "https://identifiers.org/phosphopoint.protein" ]
}, {
"name" : "PHOSPHOSITE_PROTEIN",
"commonName" : "PhosphoSite Protein",
"homepage" : "http://www.phosphosite.org/homeAction.do",
"registryIdentifier" : "MIR:00000105",
"uris" : [ "urn:miriam:phosphosite.protein", "urn:miriam:phosphosite", "http://identifiers.org/phosphosite.protein/", "http://identifiers.org/phosphosite.protein", "https://identifiers.org/phosphosite.protein/", "https://identifiers.org/phosphosite.protein" ]
}, {
"name" : "PHOSPHOSITE_RESIDUE",
"commonName" : "PhosphoSite Residue",
"homepage" : "http://www.phosphosite.org/homeAction.do",
"registryIdentifier" : "MIR:00000125",
"uris" : [ "urn:miriam:phosphosite.residue", "http://identifiers.org/phosphosite.residue/", "http://identifiers.org/phosphosite.residue", "https://identifiers.org/phosphosite.residue/", "https://identifiers.org/phosphosite.residue" ]
}, {
"name" : "PHYLOMEDB",
"commonName" : "PhylomeDB",
"homepage" : "http://phylomedb.org/",
"registryIdentifier" : "MIR:00000223",
"uris" : [ "urn:miriam:phylomedb", "http://identifiers.org/phylomedb/", "http://identifiers.org/phylomedb", "https://identifiers.org/phylomedb/", "https://identifiers.org/phylomedb" ]
}, {
"name" : "PHYTOZOME_LOCUS",
"commonName" : "Phytozome Locus",
"homepage" : "http://www.phytozome.net/",
"registryIdentifier" : "MIR:00000432",
"uris" : [ "urn:miriam:phytozome.locus", "http://identifiers.org/phytozome.locus/", "http://identifiers.org/phytozome.locus", "https://identifiers.org/phytozome.locus/", "https://identifiers.org/phytozome.locus" ]
}, {
"name" : "PINA",
"commonName" : "PINA",
"homepage" : "http://cbg.garvan.unsw.edu.au/pina/",
"registryIdentifier" : "MIR:00000359",
"uris" : [ "urn:miriam:pina", "http://identifiers.org/pina/", "http://identifiers.org/pina", "https://identifiers.org/pina/", "https://identifiers.org/pina" ]
}, {
"name" : "PIROPLASMADB",
"commonName" : "PiroplasmaDB",
"homepage" : "http://piroplasmadb.org/",
"registryIdentifier" : "MIR:00000351",
"uris" : [ "urn:miriam:piroplasma", "http://identifiers.org/piroplasma/", "http://identifiers.org/piroplasma", "https://identifiers.org/piroplasma/", "https://identifiers.org/piroplasma" ]
}, {
"name" : "PIRSF",
"commonName" : "PIRSF",
"homepage" : "https://pir.georgetown.edu/",
"registryIdentifier" : "MIR:00000017",
"uris" : [ "urn:miriam:pirsf", "http://identifiers.org/pirsf/", "http://identifiers.org/pirsf", "https://identifiers.org/pirsf/", "https://identifiers.org/pirsf" ]
}, {
"name" : "PLANT_ONTOLOGY",
"commonName" : "Plant Ontology",
"homepage" : "http://www.plantontology.org/",
"registryIdentifier" : "MIR:00000307",
"uris" : [ "urn:miriam:po", "urn:miriam:obo.po", "http://identifiers.org/po/", "http://identifiers.org/PO", "https://identifiers.org/po/", "https://identifiers.org/PO" ]
}, {
"name" : "PLASMODB",
"commonName" : "PlasmoDB",
"homepage" : "http://plasmodb.org/plasmo/",
"registryIdentifier" : "MIR:00000150",
"uris" : [ "urn:miriam:plasmodb", "http://identifiers.org/plasmodb/", "http://identifiers.org/plasmodb", "https://identifiers.org/plasmodb/", "https://identifiers.org/plasmodb" ]
}, {
"name" : "PMC",
"commonName" : "PMC International",
"homepage" : "http://europepmc.org/",
"registryIdentifier" : "MIR:00000147",
"uris" : [ "urn:miriam:pmc", "http://identifiers.org/pmc/", "http://identifiers.org/pmc", "https://identifiers.org/pmc/", "https://identifiers.org/pmc" ]
}, {
"name" : "POCKETOME",
"commonName" : "Pocketome",
"homepage" : "http://www.pocketome.org/sfSearch.cgi?act=browseall",
"registryIdentifier" : "MIR:00000400",
"uris" : [ "urn:miriam:pocketome", "http://identifiers.org/pocketome/", "http://identifiers.org/pocketome", "https://identifiers.org/pocketome/", "https://identifiers.org/pocketome" ]
}, {
"name" : "POLBASE",
"commonName" : "PolBase",
"homepage" : "http://polbase.neb.com/",
"registryIdentifier" : "MIR:00000355",
"uris" : [ "urn:miriam:polbase", "http://identifiers.org/polbase/", "http://identifiers.org/polbase", "https://identifiers.org/polbase/", "https://identifiers.org/polbase" ]
}, {
"name" : "POMBASE",
"commonName" : "PomBase",
"homepage" : "http://www.pombase.org/",
"registryIdentifier" : "MIR:00000335",
"uris" : [ "urn:miriam:pombase", "http://identifiers.org/pombase/", "http://identifiers.org/pombase", "https://identifiers.org/pombase/", "https://identifiers.org/pombase" ]
}, {
"name" : "PRIDE",
"commonName" : "PRIDE",
"homepage" : "https://www.ebi.ac.uk/pride/",
"registryIdentifier" : "MIR:00000065",
"uris" : [ "urn:miriam:pride", "http://identifiers.org/pride/", "http://identifiers.org/pride", "https://identifiers.org/pride/", "https://identifiers.org/pride" ]
}, {
"name" : "PRIDE_PROJECT",
"commonName" : "PRIDE Project",
"homepage" : "https://www.ebi.ac.uk/pride/",
"registryIdentifier" : "MIR:00000515",
"uris" : [ "urn:miriam:pride.project", "http://identifiers.org/pride.project/", "http://identifiers.org/pride.project", "https://identifiers.org/pride.project/", "https://identifiers.org/pride.project" ]
}, {
"name" : "PRINTS",
"commonName" : "PRINTS",
"homepage" : "http://www.bioinf.manchester.ac.uk/dbbrowser/sprint/",
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}, {
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}, {
"name" : "PRODOM",
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}, {
"name" : "PROSITE",
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}, {
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}, {
"name" : "PROTEIN_AFFINITY_REAGENTS",
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}, {
"name" : "PROTEIN_DATA_BANK_LIGAND",
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}, {
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}, {
"name" : "PROTEOMICSDB_PEPTIDE",
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}, {
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}, {
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}, {
"name" : "PSEUDOMONAS_GENOME_DATABASE",
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"name" : "PUBCHEM",
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}, {
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}, {
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}, {
"name" : "PUBMED",
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"name" : "RAT_GENOME_DATABASE_QTL",
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"registryIdentifier" : "MIR:00000451",
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}, {
"name" : "RAT_GENOME_DATABASE_STRAIN",
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"registryIdentifier" : "MIR:00000452",
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}, {
"name" : "REACTOME",
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"homepage" : "http://www.reactome.org/",
"registryIdentifier" : "MIR:00000018",
"uris" : [ "urn:miriam:reactome", "http://identifiers.org/reactome/", "http://identifiers.org/reactome", "https://identifiers.org/reactome/", "https://identifiers.org/reactome" ]
}, {
"name" : "REBASE",
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}, {
"name" : "REFSEQ",
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}, {
"name" : "RELATION_ONTOLOGY",
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}, {
"name" : "RESID",
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"registryIdentifier" : "MIR:00000046",
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}, {
"name" : "RFAM",
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"registryIdentifier" : "MIR:00000409",
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}, {
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}, {
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}, {
"name" : "RICE_GENOME_ANNOTATION_PROJECT",
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"uris" : [ "urn:miriam:ricegap", "http://identifiers.org/ricegap/", "http://identifiers.org/ricegap", "https://identifiers.org/ricegap/", "https://identifiers.org/ricegap" ]
}, {
"name" : "RNA_MODIFICATION_DATABASE",
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}, {
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}, {
"name" : "SABIO_RK_EC_RECORD",
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"registryIdentifier" : "MIR:00000128",
"uris" : [ "urn:miriam:sabiork.ec", "http://identifiers.org/sabiork.ec/", "http://identifiers.org/sabiork.ec", "https://identifiers.org/sabiork.ec/", "https://identifiers.org/sabiork.ec" ]
}, {
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"uris" : [ "urn:miriam:sabiork.kineticrecord", "http://identifiers.org/sabiork.kineticrecord/", "http://identifiers.org/sabiork.kineticrecord", "https://identifiers.org/sabiork.kineticrecord/", "https://identifiers.org/sabiork.kineticrecord" ]
}, {
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}, {
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}, {
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}, {
"name" : "SCERTF",
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"registryIdentifier" : "MIR:00000244",
"uris" : [ "urn:miriam:scretf", "http://identifiers.org/scretf/", "http://identifiers.org/scretf", "https://identifiers.org/scretf/", "https://identifiers.org/scretf" ]
}, {
"name" : "SEED_COMPOUND",
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"registryIdentifier" : "MIR:00000553",
"uris" : [ "http://identifiers.org/seed.compound/", "http://identifiers.org/seed.compound", "https://identifiers.org/seed.compound/", "https://identifiers.org/seed.compound" ]
}, {
"name" : "SEED_REACTIONS",
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"registryIdentifier" : "MIR:00000692",
"uris" : [ "http://identifiers.org/seed.reaction/", "http://identifiers.org/seed.reaction", "https://identifiers.org/seed.reaction/", "https://identifiers.org/seed.reaction" ]
}, {
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"registryIdentifier" : "MIR:00000081",
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}, {
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"registryIdentifier" : "MIR:00000243",
"uris" : [ "urn:miriam:insdc.sra", "http://identifiers.org/insdc.sra/", "http://identifiers.org/insdc.sra", "https://identifiers.org/insdc.sra/", "https://identifiers.org/insdc.sra" ]
}, {
"name" : "SGD",
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"registryIdentifier" : "MIR:00000023",
"uris" : [ "urn:miriam:sgd", "http://identifiers.org/sgd/", "http://identifiers.org/sgd", "https://identifiers.org/sgd/", "https://identifiers.org/sgd" ]
}, {
"name" : "SIDER_DRUG",
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"registryIdentifier" : "MIR:00000435",
"uris" : [ "urn:miriam:sider.drug", "http://identifiers.org/sider.drug/", "http://identifiers.org/sider.drug", "https://identifiers.org/sider.drug/", "https://identifiers.org/sider.drug" ]
}, {
"name" : "SIDER_SIDE_EFFECT",
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"registryIdentifier" : "MIR:00000436",
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}, {
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"registryIdentifier" : "MIR:00000252",
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}, {
"name" : "SMALL_MOLECULE_PATHWAY_DATABASE",
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"registryIdentifier" : "MIR:00000104",
"uris" : [ "urn:miriam:smpdb", "http://identifiers.org/smpdb/", "http://identifiers.org/smpdb", "https://identifiers.org/smpdb/", "https://identifiers.org/smpdb" ]
}, {
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"registryIdentifier" : "MIR:00000118",
"uris" : [ "urn:miriam:smart", "http://identifiers.org/smart/", "http://identifiers.org/smart", "https://identifiers.org/smart/", "https://identifiers.org/smart" ]
}, {
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"commonName" : "SNOMED CT",
"homepage" : "http://www.snomedbrowser.com/",
"registryIdentifier" : "MIR:00000269",
"uris" : [ "urn:miriam:snomedct", "http://identifiers.org/snomedct/", "http://identifiers.org/snomedct", "https://identifiers.org/snomedct/", "https://identifiers.org/snomedct" ]
}, {
"name" : "SOL_GENOMICS_NETWORK",
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"homepage" : "http://solgenomics.net/",
"registryIdentifier" : "MIR:00000185",
"uris" : [ "urn:miriam:sgn", "http://identifiers.org/sgn/", "http://identifiers.org/sgn", "https://identifiers.org/sgn/", "https://identifiers.org/sgn" ]
}, {
"name" : "SOYBASE",
"commonName" : "SoyBase",
"homepage" : "http://soybase.org/",
"registryIdentifier" : "MIR:00000291",
"uris" : [ "urn:miriam:soybase", "http://identifiers.org/soybase/", "http://identifiers.org/soybase", "https://identifiers.org/soybase/", "https://identifiers.org/soybase" ]
}, {
"name" : "SPECTRAL_DATABASE_FOR_ORGANIC_COMPOUNDS",
"commonName" : "Spectral Database for Organic Compounds",
"homepage" : "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/direct_frame_top.cgi",
"registryIdentifier" : "MIR:00000319",
"uris" : [ "urn:miriam:sdbs", "http://identifiers.org/sdbs/", "http://identifiers.org/sdbs", "https://identifiers.org/sdbs/", "https://identifiers.org/sdbs" ]
}, {
"name" : "SPIKE",
"commonName" : "SPIKE Map",
"homepage" : "http://www.cs.tau.ac.il/~spike/",
"registryIdentifier" : "MIR:00000321",
"uris" : [ "urn:miriam:spike.map", "http://identifiers.org/spike.map/", "http://identifiers.org/spike.map", "https://identifiers.org/spike.map/", "https://identifiers.org/spike.map" ]
}, {
"name" : "STAP",
"commonName" : "STAP",
"homepage" : "http://psb.kobic.re.kr/STAP/refinement/",
"registryIdentifier" : "MIR:00000399",
"uris" : [ "urn:miriam:stap", "http://identifiers.org/stap/", "http://identifiers.org/stap", "https://identifiers.org/stap/", "https://identifiers.org/stap" ]
}, {
"name" : "STITCH",
"commonName" : "STITCH",
"homepage" : "http://stitch.embl.de/",
"registryIdentifier" : "MIR:00000266",
"uris" : [ "urn:miriam:stitch", "http://identifiers.org/stitch/", "http://identifiers.org/stitch", "https://identifiers.org/stitch/", "https://identifiers.org/stitch" ]
}, {
"name" : "STRING",
"commonName" : "STRING",
"homepage" : "http://string-db.org/",
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"registryIdentifier" : null,
"uris" : [ ]
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}, {
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"homepage" : "http://en.wikipedia.org/wiki/Main_Page",
"registryIdentifier" : "MIR:00000384",
"uris" : [ "urn:miriam:wikipedia.en", "http://identifiers.org/wikipedia.en/", "http://identifiers.org/wikipedia.en", "https://identifiers.org/wikipedia.en/", "https://identifiers.org/wikipedia.en" ]
}, {
"name" : "WORFDB",
"commonName" : "Worfdb",
"homepage" : "http://worfdb.dfci.harvard.edu/",
"registryIdentifier" : "MIR:00000288",
"uris" : [ "urn:miriam:worfdb", "http://identifiers.org/worfdb/", "http://identifiers.org/worfdb", "https://identifiers.org/worfdb/", "https://identifiers.org/worfdb" ]
}, {
"name" : "WORM_BASE",
"commonName" : "WormBase",
"homepage" : "http://wormbase.bio2rdf.org/fct",
"registryIdentifier" : "MIR:00000027",
"uris" : [ "urn:miriam:wormbase", "http://identifiers.org/wb/", "http://identifiers.org/wb", "https://identifiers.org/wb/", "https://identifiers.org/wb" ]
}, {
"name" : "WORM_BASE_RNAI",
"commonName" : "WormBase RNAi",
"homepage" : "https://www.wormbase.org/",
"registryIdentifier" : "MIR:00000466",
"uris" : [ "urn:miriam:wormbase.rnai", "http://identifiers.org/wb.rnai/", "http://identifiers.org/wb.rnai", "https://identifiers.org/wb.rnai/", "https://identifiers.org/wb.rnai" ]
}, {
"name" : "WORMPEP",
"commonName" : "Wormpep",
"homepage" : "https://www.wormbase.org/db/seq/protein",
"registryIdentifier" : "MIR:00000031",
"uris" : [ "urn:miriam:wormpep", "http://identifiers.org/wormpep/", "http://identifiers.org/wormpep", "https://identifiers.org/wormpep/", "https://identifiers.org/wormpep" ]
}, {
"name" : "XENBASE",
"commonName" : "Xenbase",
"homepage" : "https://www.xenbase.org/",
"registryIdentifier" : "MIR:00000186",
"uris" : [ "urn:miriam:xenbase", "http://identifiers.org/xenbase/", "http://identifiers.org/xenbase", "https://identifiers.org/xenbase/", "https://identifiers.org/xenbase" ]
}, {
"name" : "YDPM",
"commonName" : "YDPM",
"homepage" : "http://www-deletion.stanford.edu/YDPM/",
"registryIdentifier" : "MIR:00000465",
"uris" : [ "urn:miriam:ydpm", "http://identifiers.org/ydpm/", "http://identifiers.org/ydpm", "https://identifiers.org/ydpm/", "https://identifiers.org/ydpm" ]
}, {
"name" : "YEAST_INTRON_DATABASE_V4_3",
"commonName" : "Yeast Intron Database v4.3",
"homepage" : "http://intron.ucsc.edu/yeast4.3/",
"registryIdentifier" : "MIR:00000521",
"uris" : [ "urn:miriam:yeastintron", "http://identifiers.org/yeastintron/", "http://identifiers.org/yeastintron", "https://identifiers.org/yeastintron/", "https://identifiers.org/yeastintron" ]
}, {
"name" : "YETFASCO",
"commonName" : "YeTFasCo",
"homepage" : "http://yetfasco.ccbr.utoronto.ca/",
"registryIdentifier" : "MIR:00000339",
"uris" : [ "urn:miriam:yetfasco", "http://identifiers.org/yetfasco/", "http://identifiers.org/yetfasco", "https://identifiers.org/yetfasco/", "https://identifiers.org/yetfasco" ]
}, {
"name" : "YEAST_INTRON_DATABASE_V3",
"commonName" : "Yeast Intron Database v3",
"homepage" : "http://compbio.soe.ucsc.edu/yeast_introns.html",
"registryIdentifier" : "MIR:00000460",
"uris" : [ "urn:miriam:yid", "http://identifiers.org/yid/", "http://identifiers.org/yid", "https://identifiers.org/yid/", "https://identifiers.org/yid" ]
}, {
"name" : "YRC_PDR",
"commonName" : "YRC PDR",
"homepage" : "http://www.yeastrc.org/pdr/",
"registryIdentifier" : "MIR:00000459",
"uris" : [ "urn:miriam:yrcpdr", "http://identifiers.org/yrcpdr/", "http://identifiers.org/yrcpdr", "https://identifiers.org/yrcpdr/", "https://identifiers.org/yrcpdr" ]
}, {
"name" : "ZFIN",
"commonName" : "ZFIN Bioentity",
"homepage" : "http://zfin.org",
"registryIdentifier" : "MIR:00000079",
"uris" : [ "urn:miriam:zfin", "http://identifiers.org/zfin/", "http://identifiers.org/zfin", "https://identifiers.org/zfin/", "https://identifiers.org/zfin" ]
}, {
"name" : "ZINC",
"commonName" : "ZINC",
"homepage" : "http://zinc15.docking.org/",
"registryIdentifier" : "MIR:00000529",
"uris" : [ "urn:miriam:zinc", "http://identifiers.org/zinc/", "http://identifiers.org/zinc", "https://identifiers.org/zinc/", "https://identifiers.org/zinc" ]
} ]2. List map formats
The map file formats this instance can parse, which are the formats accepted when a project is created from a file.
The handler value identifies the converter and corresponds to the parser that has to be selected on upload.
2.1. HTTP request
GET /minerva/new_api/configuration/map_formats/ HTTP/1.12.2. CURL sample
$ curl 'https://minerva-dev.lcsb.uni.lu/minerva/new_api/configuration/map_formats/' -X GET2.3. HTTP response
HTTP/1.1 200 OK2.4. Response Fields
| Path | Type | Description |
|---|---|---|
|
|
human readable name of the map format |
|
|
Java class used for import/export from the map format |
|
|
default file extension |
|
|
all file extensions supported by this format |
2.5. Sample Response
[ {
"name" : "CellDesigner SBML",
"extension" : "xml",
"extensions" : [ "xml" ],
"handler" : "CELL_DESIGNER"
}, {
"name" : "SBGN-ML",
"extension" : "sbgn",
"extensions" : [ "sbgn" ],
"handler" : "SBGN_ML"
}, {
"name" : "GPML",
"extension" : "gpml",
"extensions" : [ "gpml" ],
"handler" : "GPML"
}, {
"name" : "SBML",
"extension" : "xml",
"extensions" : [ "xml", "sbml" ],
"handler" : "SBML"
} ]3. List image formats
The formats a map can be rendered into (PNG, PDF, SVG), together with the file extension used for each.
The generator value identifies the renderer producing that format.
3.1. HTTP request
GET /minerva/new_api/configuration/image_formats/ HTTP/1.13.2. CURL sample
$ curl 'https://minerva-dev.lcsb.uni.lu/minerva/new_api/configuration/image_formats/' -X GET3.3. HTTP response
HTTP/1.1 200 OK3.4. Response Fields
| Path | Type | Description |
|---|---|---|
|
|
human readable name of the image format |
|
|
enum that identifies the image format generator |
|
|
file extension used for this format |
3.5. Sample Response
[ {
"name" : "PNG image",
"generator" : "PNG_GENERATOR",
"extension" : "png"
}, {
"name" : "PDF image",
"generator" : "PDF_GENERATOR",
"extension" : "pdf"
}, {
"name" : "SVG image",
"generator" : "SVG_GENERATOR",
"extension" : "svg"
} ]