Annotators query external databases (e.g. UniProt, ChEBI, HGNC, Ensembl, KEGG, GO, PDB, BRENDA, Entrez, TAIR) to attach identifiers and cross-references to map elements. Each annotator declares which element types it can handle, which existing identifiers it can use as input, and which annotations it can provide in return. The endpoints are served from /new_api/annotators/, /new_api/annotator_targets/ and /new_api/annotator_presets/.

1. List annotator types

Returns every annotator available on this instance, with its identifier and name, a description of what it does, the homepage of the database it queries, and the identifiers it can read together with the annotations it can provide in return. The element types an annotator can handle are reported as SBO terms; a base type is reported as the SBO terms of every concrete type below it, so an annotator working on proteins reports the terms of all protein types.

1.1. HTTP request

GET /minerva/new_api/annotators/ HTTP/1.1

1.2. CURL sample

$ curl 'https://minerva-dev.lcsb.uni.lu/minerva/new_api/annotators/' -X GET

1.3. HTTP response

HTTP/1.1 200 OK

1.4. Response Fields

Path Type Description

[].type

String

annotator identifier, one of: BRENDA, CAZY, CHEBI, COPY_CELL_DESIGNER_ANNOTATIONS, ENSEMBL, ENTREZ, GO, HGNC, KEGG, PDB, TAIR, UNIPROT

[].name

String

human readable name of the annotator

[].description

String

short description

[].url

String

homepage of the database from which data is being taken

[].validSboTerms

Array

SBO terms of the element types that can be annotated using this annotator

[].availableSourceInformation

Array

list of input fields/miriam_types that can be used as source information

[].availableSourceInformation[].field

String

field that can be used as source information

[].availableSourceInformation[].miriamType

String

annotation that can used as source information

[].availableAnnotationsToProvide

Array

what kind of annotations can be provided by this annotator

[].availableAnnotationsToProvide[].field

String

field that can be filled

[].availableAnnotationsToProvide[].miriamType

String

annotation type that can be provided

[].availableOptions

Array

configuration options for this annotator

[].availableOptions[].type

String

configuration type

[].availableOptions[].value

String

configuration value

1.5. Sample Response

[ {
  "type" : "BRENDA",
  "name" : "BRENDA",
  "description" : "",
  "url" : "http://www.brenda-enzymes.org",
  "validSboTerms" : [ "SBO:0000243", "SBO:0000244", "SBO:0000252", "SBO:0000278", "SBO:0000284", "SBO:0000421" ],
  "availableSourceInformation" : [ {
    "field" : null,
    "miriamType" : "TAIR_LOCUS"
  }, {
    "field" : null,
    "miriamType" : "UNIPROT"
  } ],
  "availableAnnotationsToProvide" : [ {
    "field" : null,
    "miriamType" : "BRENDA"
  } ],
  "availableOptions" : [ ]
}, {
  "type" : "CAZY",
  "name" : "CAZy",
  "description" : "",
  "url" : "http://commonchemistry.org",
  "validSboTerms" : [ "SBO:0000243", "SBO:0000244", "SBO:0000252", "SBO:0000278", "SBO:0000284", "SBO:0000421" ],
  "availableSourceInformation" : [ {
    "field" : null,
    "miriamType" : "TAIR_LOCUS"
  }, {
    "field" : null,
    "miriamType" : "UNIPROT"
  } ],
  "availableAnnotationsToProvide" : [ {
    "field" : null,
    "miriamType" : "CAZY"
  } ],
  "availableOptions" : [ ]
}, {
  "type" : "CHEBI",
  "name" : "ChEBI",
  "description" : "",
  "url" : "http://www.ebi.ac.uk/chebi/",
  "validSboTerms" : [ "SBO:0000247", "SBO:0000327" ],
  "availableSourceInformation" : [ {
    "field" : null,
    "miriamType" : "CHEBI"
  }, {
    "field" : "NAME",
    "miriamType" : null
  } ],
  "availableAnnotationsToProvide" : [ {
    "field" : "FULL_NAME",
    "miriamType" : null
  }, {
    "field" : null,
    "miriamType" : "INCHI"
  }, {
    "field" : null,
    "miriamType" : "INCHIKEY"
  }, {
    "field" : null,
    "miriamType" : "STITCH"
  }, {
    "field" : "SMILES",
    "miriamType" : null
  }, {
    "field" : "SYNONYMS",
    "miriamType" : null
  } ],
  "availableOptions" : [ ]
}, {
  "type" : "COPY_CELL_DESIGNER_ANNOTATIONS",
  "name" : "Annotate CellDesigner complex contents",
  "description" : "This annotator copies annotations of diagram elements to their analogues inside complexes, as they have no direct annotations in CellDesigner data model. Recommended for any CellDesigner diagrams and should be added as the first annotator.",
  "url" : "https://minerva.pages.uni.lu/doc/",
  "validSboTerms" : [ "SBO:0000243", "SBO:0000244", "SBO:0000247", "SBO:0000252", "SBO:0000253", "SBO:0000278", "SBO:0000284", "SBO:0000285", "SBO:0000290", "SBO:0000291", "SBO:0000298", "SBO:0000327", "SBO:0000334", "SBO:0000358", "SBO:0000421" ],
  "availableSourceInformation" : [ {
    "field" : "NAME",
    "miriamType" : null
  } ],
  "availableAnnotationsToProvide" : [ ],
  "availableOptions" : [ ]
}, {
  "type" : "ENSEMBL",
  "name" : "Ensembl",
  "description" : "",
  "url" : "https://www.ensembl.org/",
  "validSboTerms" : [ "SBO:0000243", "SBO:0000244", "SBO:0000252", "SBO:0000278", "SBO:0000284", "SBO:0000421" ],
  "availableSourceInformation" : [ {
    "field" : null,
    "miriamType" : "ENSEMBL"
  } ],
  "availableAnnotationsToProvide" : [ {
    "field" : null,
    "miriamType" : "ENTREZ"
  }, {
    "field" : null,
    "miriamType" : "HGNC"
  }, {
    "field" : null,
    "miriamType" : "HGNC_SYMBOL"
  }, {
    "field" : "FULL_NAME",
    "miriamType" : null
  }, {
    "field" : "SYMBOL",
    "miriamType" : null
  }, {
    "field" : "SYNONYMS",
    "miriamType" : null
  } ],
  "availableOptions" : [ ]
}, {
  "type" : "ENTREZ",
  "name" : "Entrez Gene",
  "description" : "",
  "url" : "http://www.ncbi.nlm.nih.gov/gene",
  "validSboTerms" : [ "SBO:0000243", "SBO:0000244", "SBO:0000252", "SBO:0000278", "SBO:0000284", "SBO:0000421" ],
  "availableSourceInformation" : [ {
    "field" : null,
    "miriamType" : "ENTREZ"
  } ],
  "availableAnnotationsToProvide" : [ {
    "field" : null,
    "miriamType" : "ENSEMBL"
  }, {
    "field" : null,
    "miriamType" : "HGNC"
  }, {
    "field" : "FULL_NAME",
    "miriamType" : null
  }, {
    "field" : "DESCRIPTION",
    "miriamType" : null
  }, {
    "field" : "SYMBOL",
    "miriamType" : null
  }, {
    "field" : "SYNONYMS",
    "miriamType" : null
  } ],
  "availableOptions" : [ ]
}, {
  "type" : "GO",
  "name" : "Gene Ontology",
  "description" : "",
  "url" : "http://amigo.geneontology.org/amigo",
  "validSboTerms" : [ "SBO:0000253", "SBO:0000290", "SBO:0000358" ],
  "availableSourceInformation" : [ {
    "field" : null,
    "miriamType" : "GO"
  } ],
  "availableAnnotationsToProvide" : [ {
    "field" : "FULL_NAME",
    "miriamType" : null
  }, {
    "field" : "DESCRIPTION",
    "miriamType" : null
  } ],
  "availableOptions" : [ ]
}, {
  "type" : "HGNC",
  "name" : "HGNC",
  "description" : "",
  "url" : "http://www.genenames.org",
  "validSboTerms" : [ "SBO:0000243", "SBO:0000244", "SBO:0000252", "SBO:0000278", "SBO:0000284", "SBO:0000421" ],
  "availableSourceInformation" : [ {
    "field" : null,
    "miriamType" : "HGNC_SYMBOL"
  }, {
    "field" : null,
    "miriamType" : "HGNC"
  }, {
    "field" : "NAME",
    "miriamType" : "HGNC_SYMBOL"
  } ],
  "availableAnnotationsToProvide" : [ {
    "field" : null,
    "miriamType" : "ENSEMBL"
  }, {
    "field" : null,
    "miriamType" : "ENTREZ"
  }, {
    "field" : null,
    "miriamType" : "HGNC"
  }, {
    "field" : null,
    "miriamType" : "HGNC_SYMBOL"
  }, {
    "field" : null,
    "miriamType" : "REFSEQ"
  }, {
    "field" : null,
    "miriamType" : "UNIPROT"
  }, {
    "field" : "SYMBOL",
    "miriamType" : null
  }, {
    "field" : "PREVIOUS_SYMBOLS",
    "miriamType" : null
  }, {
    "field" : "SYNONYMS",
    "miriamType" : null
  }, {
    "field" : "NAME",
    "miriamType" : null
  }, {
    "field" : "FULL_NAME",
    "miriamType" : null
  } ],
  "availableOptions" : [ ]
}, {
  "type" : "KEGG",
  "name" : "KEGG",
  "description" : "Annotations extracted from KEGG ENZYME Database based on species EC numbers. Annotation include relevant publications and homologous genes for given EC numbers.",
  "url" : "https://www.genome.jp/kegg/",
  "validSboTerms" : [ "SBO:0000243", "SBO:0000244", "SBO:0000252", "SBO:0000278", "SBO:0000284", "SBO:0000421" ],
  "availableSourceInformation" : [ {
    "field" : null,
    "miriamType" : "TAIR_LOCUS"
  }, {
    "field" : null,
    "miriamType" : "UNIPROT"
  }, {
    "field" : null,
    "miriamType" : "EC"
  } ],
  "availableAnnotationsToProvide" : [ {
    "field" : null,
    "miriamType" : "PUBMED"
  }, {
    "field" : null,
    "miriamType" : "TAIR_LOCUS"
  } ],
  "availableOptions" : [ {
    "type" : "KEGG_ORGANISM_IDENTIFIER",
    "value" : ""
  } ]
}, {
  "type" : "PDB",
  "name" : "Protein Data Bank",
  "description" : "",
  "url" : "http://www.pdbe.org/",
  "validSboTerms" : [ "SBO:0000243", "SBO:0000244", "SBO:0000252", "SBO:0000278", "SBO:0000284", "SBO:0000421" ],
  "availableSourceInformation" : [ {
    "field" : null,
    "miriamType" : "UNIPROT"
  } ],
  "availableAnnotationsToProvide" : [ {
    "field" : null,
    "miriamType" : "PDB"
  } ],
  "availableOptions" : [ ]
}, {
  "type" : "TAIR",
  "name" : "TAIR",
  "description" : "",
  "url" : "http://arabidopsis.org/index.jsp",
  "validSboTerms" : [ "SBO:0000243", "SBO:0000244", "SBO:0000252", "SBO:0000278", "SBO:0000284", "SBO:0000421" ],
  "availableSourceInformation" : [ {
    "field" : null,
    "miriamType" : "TAIR_LOCUS"
  } ],
  "availableAnnotationsToProvide" : [ {
    "field" : null,
    "miriamType" : "UNIPROT"
  } ],
  "availableOptions" : [ ]
}, {
  "type" : "UNIPROT",
  "name" : "UniProt",
  "description" : "",
  "url" : "http://www.uniprot.org/",
  "validSboTerms" : [ "SBO:0000243", "SBO:0000244", "SBO:0000252", "SBO:0000278", "SBO:0000284", "SBO:0000421" ],
  "availableSourceInformation" : [ {
    "field" : null,
    "miriamType" : "UNIPROT"
  }, {
    "field" : "NAME",
    "miriamType" : "UNIPROT"
  } ],
  "availableAnnotationsToProvide" : [ {
    "field" : null,
    "miriamType" : "HGNC_SYMBOL"
  }, {
    "field" : null,
    "miriamType" : "UNIPROT"
  }, {
    "field" : null,
    "miriamType" : "EC"
  }, {
    "field" : null,
    "miriamType" : "STRING"
  }, {
    "field" : null,
    "miriamType" : "ENTREZ"
  } ],
  "availableOptions" : [ ]
} ]

2. List annotator target types

Returns the kinds of map element an annotator can be applied to - CHEMICAL, COMPARTMENT, COMPLEX, GENE, OTHER, PATHWAY, PHENOTYPE, PROTEIN, REACTION and RNA. These are the values to choose from in the targets of a preset annotator; each annotator separately reports the SBO terms of the element types it actually supports.

2.1. HTTP request

GET /minerva/new_api/annotator_targets/ HTTP/1.1

2.2. CURL sample

$ curl 'https://minerva-dev.lcsb.uni.lu/minerva/new_api/annotator_targets/' -X GET

2.3. HTTP response

HTTP/1.1 200 OK

2.4. Response Fields

Path Type Description

[]type

String

target identifier, one of: CHEMICAL, COMPARTMENT, COMPLEX, GENE, OTHER, PATHWAY, PHENOTYPE, PROTEIN, REACTION, RNA

[]name

String

human readable name

2.5. Sample Response

[ {
  "type" : "CHEMICAL",
  "name" : "Chemical"
}, {
  "type" : "COMPARTMENT",
  "name" : "Compartment"
}, {
  "type" : "COMPLEX",
  "name" : "Complex"
}, {
  "type" : "GENE",
  "name" : "Gene"
}, {
  "type" : "OTHER",
  "name" : "Other"
}, {
  "type" : "PATHWAY",
  "name" : "Pathway"
}, {
  "type" : "PHENOTYPE",
  "name" : "Phenotype"
}, {
  "type" : "PROTEIN",
  "name" : "Protein"
}, {
  "type" : "REACTION",
  "name" : "Reaction"
}, {
  "type" : "RNA",
  "name" : "RNA"
} ]

3. Annotator presets

A preset is a named, saved annotation configuration: an ordered list of annotators, each with the element types (targets) it should be applied to, the source identifiers it may read, the annotations it should provide, and any annotator-specific options. Presets let the same annotation pipeline be reused across projects instead of being configured again for every upload. Creating, updating and deleting a preset requires the administrator or curator role.

3.1. List annotator presets

Returns a page of the presets defined in this instance, each with its name, last update time and configured annotators.

Note
 The result is paged - use the page and size query parameters to walk through it.

3.1.1. HTTP request

GET /minerva/new_api/annotator_presets/ HTTP/1.1

3.1.2. Query Parameters

Parameter Description

page

index of the page to fetch, counted from 0; 0 by default

size

number of entries on a page; 20 by default, 10000 at most

3.1.3. CURL sample

$ curl 'https://minerva-dev.lcsb.uni.lu/minerva/new_api/annotator_presets/' -X GET

3.1.4. HTTP response

HTTP/1.1 200 OK

3.1.5. Response Fields

Path Type Description

content

Array

list of presets on the page

content[].name

String

preset name

content[].updatedAt

String

when preset was last updated

content[].id

Number

preset id

content[].annotators[].order

Number

order in which annotators are being processed

content[].annotators[].targets

Array

element types to annotate, one of: CHEMICAL, COMPARTMENT, COMPLEX, GENE, OTHER, PATHWAY, PHENOTYPE, PROTEIN, REACTION, RNA

content[].annotators[].annotator

String

annotator identifier, one of: BRENDA, CAZY, CHEBI, COPY_CELL_DESIGNER_ANNOTATIONS, ENSEMBL, ENTREZ, GO, HGNC, KEGG, PDB, TAIR, UNIPROT

content[].annotators[].sourceInformation

Array

what should be considered as source information

content[].annotators[].sourceInformation[].order

Number

order in which source information should be taken into account

content[].annotators[].sourceInformation[].field

String

field type that is used as source information

content[].annotators[].sourceInformation[].miriamType

String

type of annotation that should be used as source information

content[].annotators[].annotationsToProvide

Array

what annotations should be added

content[].annotators[].annotationsToProvide[].field

String

field that should be filled by annotator

content[].annotators[].annotationsToProvide[].miriamType

String

annotation that should added by annotator

content[].annotators[].options

Array

annotator options

content[].annotators[].options[].type

String

type of the configuration option

content[].annotators[].options[].value

String

value for the configuration option

totalPages

Number

total number of pages

totalElements

Number

total number of elements

numberOfElements

Number

number of elements on this page

size

Number

page size

number

Number

page number

3.1.6. Sample Response

{
  "content" : [ {
    "id" : 1,
    "name" : "DEFAULT",
    "updatedAt" : "2026-09-23 23:10:03",
    "annotators" : [ {
      "order" : 0,
      "targets" : [ "COMPLEX" ],
      "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
      "sourceInformation" : [ {
        "order" : 0,
        "field" : "NAME",
        "miriamType" : null
      } ],
      "annotationsToProvide" : [ ],
      "options" : [ ]
    }, {
      "order" : 1,
      "targets" : [ "COMPLEX" ],
      "annotator" : "GO",
      "sourceInformation" : [ {
        "order" : 0,
        "field" : null,
        "miriamType" : "GO"
      } ],
      "annotationsToProvide" : [ {
        "field" : "FULL_NAME",
        "miriamType" : null
      }, {
        "field" : "DESCRIPTION",
        "miriamType" : null
      } ],
      "options" : [ ]
    }, {
      "order" : 0,
      "targets" : [ "GENE" ],
      "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
      "sourceInformation" : [ {
        "order" : 0,
        "field" : "NAME",
        "miriamType" : null
      } ],
      "annotationsToProvide" : [ ],
      "options" : [ ]
    }, {
      "order" : 1,
      "targets" : [ "GENE" ],
      "annotator" : "HGNC",
      "sourceInformation" : [ {
        "order" : 0,
        "field" : null,
        "miriamType" : "HGNC_SYMBOL"
      }, {
        "order" : 1,
        "field" : null,
        "miriamType" : "HGNC"
      }, {
        "order" : 2,
        "field" : "NAME",
        "miriamType" : "HGNC_SYMBOL"
      } ],
      "annotationsToProvide" : [ {
        "field" : null,
        "miriamType" : "ENSEMBL"
      }, {
        "field" : null,
        "miriamType" : "ENTREZ"
      }, {
        "field" : null,
        "miriamType" : "HGNC"
      }, {
        "field" : null,
        "miriamType" : "HGNC_SYMBOL"
      }, {
        "field" : null,
        "miriamType" : "REFSEQ"
      }, {
        "field" : null,
        "miriamType" : "UNIPROT"
      }, {
        "field" : "SYMBOL",
        "miriamType" : null
      }, {
        "field" : "PREVIOUS_SYMBOLS",
        "miriamType" : null
      }, {
        "field" : "SYNONYMS",
        "miriamType" : null
      }, {
        "field" : "NAME",
        "miriamType" : null
      }, {
        "field" : "FULL_NAME",
        "miriamType" : null
      } ],
      "options" : [ ]
    }, {
      "order" : 0,
      "targets" : [ "PROTEIN" ],
      "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
      "sourceInformation" : [ {
        "order" : 0,
        "field" : "NAME",
        "miriamType" : null
      } ],
      "annotationsToProvide" : [ ],
      "options" : [ ]
    }, {
      "order" : 1,
      "targets" : [ "PROTEIN" ],
      "annotator" : "HGNC",
      "sourceInformation" : [ {
        "order" : 0,
        "field" : null,
        "miriamType" : "HGNC_SYMBOL"
      }, {
        "order" : 1,
        "field" : null,
        "miriamType" : "HGNC"
      }, {
        "order" : 2,
        "field" : "NAME",
        "miriamType" : "HGNC_SYMBOL"
      } ],
      "annotationsToProvide" : [ {
        "field" : null,
        "miriamType" : "ENSEMBL"
      }, {
        "field" : null,
        "miriamType" : "ENTREZ"
      }, {
        "field" : null,
        "miriamType" : "HGNC"
      }, {
        "field" : null,
        "miriamType" : "HGNC_SYMBOL"
      }, {
        "field" : null,
        "miriamType" : "REFSEQ"
      }, {
        "field" : null,
        "miriamType" : "UNIPROT"
      }, {
        "field" : "SYMBOL",
        "miriamType" : null
      }, {
        "field" : "PREVIOUS_SYMBOLS",
        "miriamType" : null
      }, {
        "field" : "SYNONYMS",
        "miriamType" : null
      }, {
        "field" : "NAME",
        "miriamType" : null
      }, {
        "field" : "FULL_NAME",
        "miriamType" : null
      } ],
      "options" : [ ]
    }, {
      "order" : 0,
      "targets" : [ "PATHWAY" ],
      "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
      "sourceInformation" : [ {
        "order" : 0,
        "field" : "NAME",
        "miriamType" : null
      } ],
      "annotationsToProvide" : [ ],
      "options" : [ ]
    }, {
      "order" : 1,
      "targets" : [ "PATHWAY" ],
      "annotator" : "GO",
      "sourceInformation" : [ {
        "order" : 0,
        "field" : null,
        "miriamType" : "GO"
      } ],
      "annotationsToProvide" : [ {
        "field" : "FULL_NAME",
        "miriamType" : null
      }, {
        "field" : "DESCRIPTION",
        "miriamType" : null
      } ],
      "options" : [ ]
    }, {
      "order" : 0,
      "targets" : [ "PHENOTYPE" ],
      "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
      "sourceInformation" : [ {
        "order" : 0,
        "field" : "NAME",
        "miriamType" : null
      } ],
      "annotationsToProvide" : [ ],
      "options" : [ ]
    }, {
      "order" : 1,
      "targets" : [ "PHENOTYPE" ],
      "annotator" : "GO",
      "sourceInformation" : [ {
        "order" : 0,
        "field" : null,
        "miriamType" : "GO"
      } ],
      "annotationsToProvide" : [ {
        "field" : "FULL_NAME",
        "miriamType" : null
      }, {
        "field" : "DESCRIPTION",
        "miriamType" : null
      } ],
      "options" : [ ]
    }, {
      "order" : 0,
      "targets" : [ "RNA" ],
      "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
      "sourceInformation" : [ {
        "order" : 0,
        "field" : "NAME",
        "miriamType" : null
      } ],
      "annotationsToProvide" : [ ],
      "options" : [ ]
    }, {
      "order" : 1,
      "targets" : [ "RNA" ],
      "annotator" : "HGNC",
      "sourceInformation" : [ {
        "order" : 0,
        "field" : null,
        "miriamType" : "HGNC_SYMBOL"
      }, {
        "order" : 1,
        "field" : null,
        "miriamType" : "HGNC"
      }, {
        "order" : 2,
        "field" : "NAME",
        "miriamType" : "HGNC_SYMBOL"
      } ],
      "annotationsToProvide" : [ {
        "field" : null,
        "miriamType" : "ENSEMBL"
      }, {
        "field" : null,
        "miriamType" : "ENTREZ"
      }, {
        "field" : null,
        "miriamType" : "HGNC"
      }, {
        "field" : null,
        "miriamType" : "HGNC_SYMBOL"
      }, {
        "field" : null,
        "miriamType" : "REFSEQ"
      }, {
        "field" : null,
        "miriamType" : "UNIPROT"
      }, {
        "field" : "SYMBOL",
        "miriamType" : null
      }, {
        "field" : "PREVIOUS_SYMBOLS",
        "miriamType" : null
      }, {
        "field" : "SYNONYMS",
        "miriamType" : null
      }, {
        "field" : "NAME",
        "miriamType" : null
      }, {
        "field" : "FULL_NAME",
        "miriamType" : null
      } ],
      "options" : [ ]
    }, {
      "order" : 0,
      "targets" : [ "CHEMICAL" ],
      "annotator" : "CHEBI",
      "sourceInformation" : [ {
        "order" : 0,
        "field" : null,
        "miriamType" : "CHEBI"
      }, {
        "order" : 1,
        "field" : "NAME",
        "miriamType" : null
      } ],
      "annotationsToProvide" : [ {
        "field" : "FULL_NAME",
        "miriamType" : null
      }, {
        "field" : null,
        "miriamType" : "INCHI"
      }, {
        "field" : null,
        "miriamType" : "INCHIKEY"
      }, {
        "field" : null,
        "miriamType" : "STITCH"
      }, {
        "field" : "SMILES",
        "miriamType" : null
      }, {
        "field" : "SYNONYMS",
        "miriamType" : null
      } ],
      "options" : [ ]
    }, {
      "order" : 1,
      "targets" : [ "CHEMICAL" ],
      "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
      "sourceInformation" : [ {
        "order" : 0,
        "field" : "NAME",
        "miriamType" : null
      } ],
      "annotationsToProvide" : [ ],
      "options" : [ ]
    }, {
      "order" : 0,
      "targets" : [ "COMPARTMENT" ],
      "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
      "sourceInformation" : [ {
        "order" : 0,
        "field" : "NAME",
        "miriamType" : null
      } ],
      "annotationsToProvide" : [ ],
      "options" : [ ]
    }, {
      "order" : 1,
      "targets" : [ "COMPARTMENT" ],
      "annotator" : "GO",
      "sourceInformation" : [ {
        "order" : 0,
        "field" : null,
        "miriamType" : "GO"
      } ],
      "annotationsToProvide" : [ {
        "field" : "FULL_NAME",
        "miriamType" : null
      }, {
        "field" : "DESCRIPTION",
        "miriamType" : null
      } ],
      "options" : [ ]
    }, {
      "order" : 0,
      "targets" : [ "OTHER" ],
      "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
      "sourceInformation" : [ {
        "order" : 0,
        "field" : "NAME",
        "miriamType" : null
      } ],
      "annotationsToProvide" : [ ],
      "options" : [ ]
    } ]
  } ],
  "totalPages" : 1,
  "totalElements" : 1,
  "numberOfElements" : 1,
  "size" : 20,
  "number" : 0
}

3.2. Get annotator preset

Returns a single preset by its numeric id, with its full list of configured annotators.

3.2.1. HTTP request

GET /minerva/new_api/annotator_presets/1 HTTP/1.1

3.2.2. CURL sample

$ curl 'https://minerva-dev.lcsb.uni.lu/minerva/new_api/annotator_presets/1' -X GET

3.2.3. HTTP response

HTTP/1.1 200 OK

3.2.4. Response Fields

Path Type Description

name

String

preset name

updatedAt

String

when preset was last updated

id

Number

preset id

annotators[].order

Number

order in which annotators are being processed

annotators[].targets

Array

element types to annotate, one of: CHEMICAL, COMPARTMENT, COMPLEX, GENE, OTHER, PATHWAY, PHENOTYPE, PROTEIN, REACTION, RNA

annotators[].annotator

String

annotator identifier, one of: BRENDA, CAZY, CHEBI, COPY_CELL_DESIGNER_ANNOTATIONS, ENSEMBL, ENTREZ, GO, HGNC, KEGG, PDB, TAIR, UNIPROT

annotators[].sourceInformation

Array

what should be considered as source information

annotators[].sourceInformation[].order

Number

order in which source information should be taken into account

annotators[].sourceInformation[].field

String

field type that is used as source information

annotators[].sourceInformation[].miriamType

String

type of annotation that should be used as source information

annotators[].annotationsToProvide

Array

what annotations should be added

annotators[].annotationsToProvide[].field

String

field that should be filled by annotator

annotators[].annotationsToProvide[].miriamType

String

annotation that should added by annotator

annotators[].options

Array

annotator options

annotators[].options[].type

String

type of the configuration option

annotators[].options[].value

String

value for the configuration option

3.2.5. Sample Response

{
  "id" : 1,
  "name" : "DEFAULT",
  "updatedAt" : "2026-09-23 23:10:03",
  "annotators" : [ {
    "order" : 0,
    "targets" : [ "COMPLEX" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ ],
    "options" : [ ]
  }, {
    "order" : 1,
    "targets" : [ "COMPLEX" ],
    "annotator" : "GO",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : null,
      "miriamType" : "GO"
    } ],
    "annotationsToProvide" : [ {
      "field" : "FULL_NAME",
      "miriamType" : null
    }, {
      "field" : "DESCRIPTION",
      "miriamType" : null
    } ],
    "options" : [ ]
  }, {
    "order" : 0,
    "targets" : [ "GENE" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ ],
    "options" : [ ]
  }, {
    "order" : 1,
    "targets" : [ "GENE" ],
    "annotator" : "HGNC",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : null,
      "miriamType" : "HGNC_SYMBOL"
    }, {
      "order" : 1,
      "field" : null,
      "miriamType" : "HGNC"
    }, {
      "order" : 2,
      "field" : "NAME",
      "miriamType" : "HGNC_SYMBOL"
    } ],
    "annotationsToProvide" : [ {
      "field" : null,
      "miriamType" : "ENSEMBL"
    }, {
      "field" : null,
      "miriamType" : "ENTREZ"
    }, {
      "field" : null,
      "miriamType" : "HGNC"
    }, {
      "field" : null,
      "miriamType" : "HGNC_SYMBOL"
    }, {
      "field" : null,
      "miriamType" : "REFSEQ"
    }, {
      "field" : null,
      "miriamType" : "UNIPROT"
    }, {
      "field" : "SYMBOL",
      "miriamType" : null
    }, {
      "field" : "PREVIOUS_SYMBOLS",
      "miriamType" : null
    }, {
      "field" : "SYNONYMS",
      "miriamType" : null
    }, {
      "field" : "NAME",
      "miriamType" : null
    }, {
      "field" : "FULL_NAME",
      "miriamType" : null
    } ],
    "options" : [ ]
  }, {
    "order" : 0,
    "targets" : [ "PROTEIN" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ ],
    "options" : [ ]
  }, {
    "order" : 1,
    "targets" : [ "PROTEIN" ],
    "annotator" : "HGNC",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : null,
      "miriamType" : "HGNC_SYMBOL"
    }, {
      "order" : 1,
      "field" : null,
      "miriamType" : "HGNC"
    }, {
      "order" : 2,
      "field" : "NAME",
      "miriamType" : "HGNC_SYMBOL"
    } ],
    "annotationsToProvide" : [ {
      "field" : null,
      "miriamType" : "ENSEMBL"
    }, {
      "field" : null,
      "miriamType" : "ENTREZ"
    }, {
      "field" : null,
      "miriamType" : "HGNC"
    }, {
      "field" : null,
      "miriamType" : "HGNC_SYMBOL"
    }, {
      "field" : null,
      "miriamType" : "REFSEQ"
    }, {
      "field" : null,
      "miriamType" : "UNIPROT"
    }, {
      "field" : "SYMBOL",
      "miriamType" : null
    }, {
      "field" : "PREVIOUS_SYMBOLS",
      "miriamType" : null
    }, {
      "field" : "SYNONYMS",
      "miriamType" : null
    }, {
      "field" : "NAME",
      "miriamType" : null
    }, {
      "field" : "FULL_NAME",
      "miriamType" : null
    } ],
    "options" : [ ]
  }, {
    "order" : 0,
    "targets" : [ "PATHWAY" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ ],
    "options" : [ ]
  }, {
    "order" : 1,
    "targets" : [ "PATHWAY" ],
    "annotator" : "GO",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : null,
      "miriamType" : "GO"
    } ],
    "annotationsToProvide" : [ {
      "field" : "FULL_NAME",
      "miriamType" : null
    }, {
      "field" : "DESCRIPTION",
      "miriamType" : null
    } ],
    "options" : [ ]
  }, {
    "order" : 0,
    "targets" : [ "PHENOTYPE" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ ],
    "options" : [ ]
  }, {
    "order" : 1,
    "targets" : [ "PHENOTYPE" ],
    "annotator" : "GO",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : null,
      "miriamType" : "GO"
    } ],
    "annotationsToProvide" : [ {
      "field" : "FULL_NAME",
      "miriamType" : null
    }, {
      "field" : "DESCRIPTION",
      "miriamType" : null
    } ],
    "options" : [ ]
  }, {
    "order" : 0,
    "targets" : [ "RNA" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ ],
    "options" : [ ]
  }, {
    "order" : 1,
    "targets" : [ "RNA" ],
    "annotator" : "HGNC",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : null,
      "miriamType" : "HGNC_SYMBOL"
    }, {
      "order" : 1,
      "field" : null,
      "miriamType" : "HGNC"
    }, {
      "order" : 2,
      "field" : "NAME",
      "miriamType" : "HGNC_SYMBOL"
    } ],
    "annotationsToProvide" : [ {
      "field" : null,
      "miriamType" : "ENSEMBL"
    }, {
      "field" : null,
      "miriamType" : "ENTREZ"
    }, {
      "field" : null,
      "miriamType" : "HGNC"
    }, {
      "field" : null,
      "miriamType" : "HGNC_SYMBOL"
    }, {
      "field" : null,
      "miriamType" : "REFSEQ"
    }, {
      "field" : null,
      "miriamType" : "UNIPROT"
    }, {
      "field" : "SYMBOL",
      "miriamType" : null
    }, {
      "field" : "PREVIOUS_SYMBOLS",
      "miriamType" : null
    }, {
      "field" : "SYNONYMS",
      "miriamType" : null
    }, {
      "field" : "NAME",
      "miriamType" : null
    }, {
      "field" : "FULL_NAME",
      "miriamType" : null
    } ],
    "options" : [ ]
  }, {
    "order" : 0,
    "targets" : [ "CHEMICAL" ],
    "annotator" : "CHEBI",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : null,
      "miriamType" : "CHEBI"
    }, {
      "order" : 1,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ {
      "field" : "FULL_NAME",
      "miriamType" : null
    }, {
      "field" : null,
      "miriamType" : "INCHI"
    }, {
      "field" : null,
      "miriamType" : "INCHIKEY"
    }, {
      "field" : null,
      "miriamType" : "STITCH"
    }, {
      "field" : "SMILES",
      "miriamType" : null
    }, {
      "field" : "SYNONYMS",
      "miriamType" : null
    } ],
    "options" : [ ]
  }, {
    "order" : 1,
    "targets" : [ "CHEMICAL" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ ],
    "options" : [ ]
  }, {
    "order" : 0,
    "targets" : [ "COMPARTMENT" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ ],
    "options" : [ ]
  }, {
    "order" : 1,
    "targets" : [ "COMPARTMENT" ],
    "annotator" : "GO",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : null,
      "miriamType" : "GO"
    } ],
    "annotationsToProvide" : [ {
      "field" : "FULL_NAME",
      "miriamType" : null
    }, {
      "field" : "DESCRIPTION",
      "miriamType" : null
    } ],
    "options" : [ ]
  }, {
    "order" : 0,
    "targets" : [ "OTHER" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ ],
    "options" : [ ]
  } ]
}

3.3. Add annotator preset

Saves a new preset from the given name and list of annotator configurations; the created preset, including its assigned id, is returned.

3.3.1. HTTP request

POST /minerva/new_api/annotator_presets/ HTTP/1.1

3.3.2. CURL sample

$ curl 'https://minerva-dev.lcsb.uni.lu/minerva/new_api/annotator_presets/' -X POST \
    -H 'Authorization: Bearer xxxxxxxx' \
    -d '{"name":"Casey Bradtke","annotators":[{"annotator":"COPY_CELL_DESIGNER_ANNOTATIONS","order":3,"targets":["RNA"],"annotationsToProvide":[{"field":"DESCRIPTION","miriamType":null}],"sourceInformation":[{"field":"CHARGE","miriamType":null,"order":4}],"options":[{"type":"KEGG_ORGANISM_IDENTIFIER","value":"ovsbe"}]}]}' \
    -H 'Content-Type: application/json'

3.3.3. HTTP response

HTTP/1.1 201 Created

3.3.4. Response Fields

Path Type Description

name

String

preset name

updatedAt

String

when preset was last updated

id

Number

preset id

annotators[].order

Number

order in which annotators are being processed

annotators[].targets

Array

element types to annotate, one of: CHEMICAL, COMPARTMENT, COMPLEX, GENE, OTHER, PATHWAY, PHENOTYPE, PROTEIN, REACTION, RNA

annotators[].annotator

String

annotator identifier, one of: BRENDA, CAZY, CHEBI, COPY_CELL_DESIGNER_ANNOTATIONS, ENSEMBL, ENTREZ, GO, HGNC, KEGG, PDB, TAIR, UNIPROT

annotators[].sourceInformation

Array

what should be considered as source information

annotators[].sourceInformation[].order

Number

order in which source information should be taken into account

annotators[].sourceInformation[].field

String

field type that is used as source information

annotators[].sourceInformation[].miriamType

String

type of annotation that should be used as source information

annotators[].annotationsToProvide

Array

what annotations should be added

annotators[].annotationsToProvide[].field

String

field that should be filled by annotator

annotators[].annotationsToProvide[].miriamType

String

annotation that should added by annotator

annotators[].options

Array

annotator options

annotators[].options[].type

String

type of the configuration option

annotators[].options[].value

String

value for the configuration option

3.3.5. Sample Response

{
  "id" : 2,
  "name" : "Casey Bradtke",
  "updatedAt" : "2026-09-23 23:10:46",
  "annotators" : [ {
    "order" : 0,
    "targets" : [ "RNA" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 1,
      "field" : "CHARGE",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ {
      "field" : "DESCRIPTION",
      "miriamType" : null
    } ],
    "options" : [ {
      "type" : "KEGG_ORGANISM_IDENTIFIER",
      "value" : "ovsbe"
    } ]
  } ]
}

3.4. Update annotator preset

Replaces the name and the annotator configuration of an existing preset; the request body has the same structure as when creating one.

3.4.1. HTTP request

PUT /minerva/new_api/annotator_presets/1 HTTP/1.1

3.4.2. Path Parameters

Table 1. /minerva/new_api/annotator_presets/{id}
Parameter Description

id

preset identifier

3.4.3. CURL sample

$ curl 'https://minerva-dev.lcsb.uni.lu/minerva/new_api/annotator_presets/1' -X PUT \
    -H 'Authorization: Bearer xxxxxxxx' \
    -d '{"name":"Venita Shanahan","annotators":[{"annotator":"COPY_CELL_DESIGNER_ANNOTATIONS","order":8,"targets":["RNA"],"annotationsToProvide":[{"field":"SMILES","miriamType":null}],"sourceInformation":[{"field":null,"miriamType":"ECO","order":2}],"options":[{"type":"KEGG_ORGANISM_IDENTIFIER","value":"tjhoz"}]}]}' \
    -H 'Content-Type: application/json'

3.4.4. HTTP response

HTTP/1.1 200 OK

3.4.5. Response Fields

Path Type Description

name

String

preset name

updatedAt

String

when preset was last updated

id

Number

preset id

annotators[].order

Number

order in which annotators are being processed

annotators[].targets

Array

element types to annotate, one of: CHEMICAL, COMPARTMENT, COMPLEX, GENE, OTHER, PATHWAY, PHENOTYPE, PROTEIN, REACTION, RNA

annotators[].annotator

String

annotator identifier, one of: BRENDA, CAZY, CHEBI, COPY_CELL_DESIGNER_ANNOTATIONS, ENSEMBL, ENTREZ, GO, HGNC, KEGG, PDB, TAIR, UNIPROT

annotators[].sourceInformation

Array

what should be considered as source information

annotators[].sourceInformation[].order

Number

order in which source information should be taken into account

annotators[].sourceInformation[].field

String

field type that is used as source information

annotators[].sourceInformation[].miriamType

String

type of annotation that should be used as source information

annotators[].annotationsToProvide

Array

what annotations should be added

annotators[].annotationsToProvide[].field

String

field that should be filled by annotator

annotators[].annotationsToProvide[].miriamType

String

annotation that should added by annotator

annotators[].options

Array

annotator options

annotators[].options[].type

String

type of the configuration option

annotators[].options[].value

String

value for the configuration option

3.4.6. Sample Response

{
  "id" : 1,
  "name" : "DEFAULT",
  "updatedAt" : "2026-09-23 23:10:03",
  "annotators" : [ {
    "order" : 0,
    "targets" : [ "COMPLEX" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ ],
    "options" : [ ]
  }, {
    "order" : 1,
    "targets" : [ "COMPLEX" ],
    "annotator" : "GO",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : null,
      "miriamType" : "GO"
    } ],
    "annotationsToProvide" : [ {
      "field" : "FULL_NAME",
      "miriamType" : null
    }, {
      "field" : "DESCRIPTION",
      "miriamType" : null
    } ],
    "options" : [ ]
  }, {
    "order" : 0,
    "targets" : [ "GENE" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ ],
    "options" : [ ]
  }, {
    "order" : 1,
    "targets" : [ "GENE" ],
    "annotator" : "HGNC",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : null,
      "miriamType" : "HGNC_SYMBOL"
    }, {
      "order" : 1,
      "field" : null,
      "miriamType" : "HGNC"
    }, {
      "order" : 2,
      "field" : "NAME",
      "miriamType" : "HGNC_SYMBOL"
    } ],
    "annotationsToProvide" : [ {
      "field" : null,
      "miriamType" : "ENSEMBL"
    }, {
      "field" : null,
      "miriamType" : "ENTREZ"
    }, {
      "field" : null,
      "miriamType" : "HGNC"
    }, {
      "field" : null,
      "miriamType" : "HGNC_SYMBOL"
    }, {
      "field" : null,
      "miriamType" : "REFSEQ"
    }, {
      "field" : null,
      "miriamType" : "UNIPROT"
    }, {
      "field" : "SYMBOL",
      "miriamType" : null
    }, {
      "field" : "PREVIOUS_SYMBOLS",
      "miriamType" : null
    }, {
      "field" : "SYNONYMS",
      "miriamType" : null
    }, {
      "field" : "NAME",
      "miriamType" : null
    }, {
      "field" : "FULL_NAME",
      "miriamType" : null
    } ],
    "options" : [ ]
  }, {
    "order" : 0,
    "targets" : [ "PROTEIN" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ ],
    "options" : [ ]
  }, {
    "order" : 1,
    "targets" : [ "PROTEIN" ],
    "annotator" : "HGNC",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : null,
      "miriamType" : "HGNC_SYMBOL"
    }, {
      "order" : 1,
      "field" : null,
      "miriamType" : "HGNC"
    }, {
      "order" : 2,
      "field" : "NAME",
      "miriamType" : "HGNC_SYMBOL"
    } ],
    "annotationsToProvide" : [ {
      "field" : null,
      "miriamType" : "ENSEMBL"
    }, {
      "field" : null,
      "miriamType" : "ENTREZ"
    }, {
      "field" : null,
      "miriamType" : "HGNC"
    }, {
      "field" : null,
      "miriamType" : "HGNC_SYMBOL"
    }, {
      "field" : null,
      "miriamType" : "REFSEQ"
    }, {
      "field" : null,
      "miriamType" : "UNIPROT"
    }, {
      "field" : "SYMBOL",
      "miriamType" : null
    }, {
      "field" : "PREVIOUS_SYMBOLS",
      "miriamType" : null
    }, {
      "field" : "SYNONYMS",
      "miriamType" : null
    }, {
      "field" : "NAME",
      "miriamType" : null
    }, {
      "field" : "FULL_NAME",
      "miriamType" : null
    } ],
    "options" : [ ]
  }, {
    "order" : 0,
    "targets" : [ "PATHWAY" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ ],
    "options" : [ ]
  }, {
    "order" : 1,
    "targets" : [ "PATHWAY" ],
    "annotator" : "GO",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : null,
      "miriamType" : "GO"
    } ],
    "annotationsToProvide" : [ {
      "field" : "FULL_NAME",
      "miriamType" : null
    }, {
      "field" : "DESCRIPTION",
      "miriamType" : null
    } ],
    "options" : [ ]
  }, {
    "order" : 0,
    "targets" : [ "PHENOTYPE" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ ],
    "options" : [ ]
  }, {
    "order" : 1,
    "targets" : [ "PHENOTYPE" ],
    "annotator" : "GO",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : null,
      "miriamType" : "GO"
    } ],
    "annotationsToProvide" : [ {
      "field" : "FULL_NAME",
      "miriamType" : null
    }, {
      "field" : "DESCRIPTION",
      "miriamType" : null
    } ],
    "options" : [ ]
  }, {
    "order" : 0,
    "targets" : [ "RNA" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ ],
    "options" : [ ]
  }, {
    "order" : 1,
    "targets" : [ "RNA" ],
    "annotator" : "HGNC",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : null,
      "miriamType" : "HGNC_SYMBOL"
    }, {
      "order" : 1,
      "field" : null,
      "miriamType" : "HGNC"
    }, {
      "order" : 2,
      "field" : "NAME",
      "miriamType" : "HGNC_SYMBOL"
    } ],
    "annotationsToProvide" : [ {
      "field" : null,
      "miriamType" : "ENSEMBL"
    }, {
      "field" : null,
      "miriamType" : "ENTREZ"
    }, {
      "field" : null,
      "miriamType" : "HGNC"
    }, {
      "field" : null,
      "miriamType" : "HGNC_SYMBOL"
    }, {
      "field" : null,
      "miriamType" : "REFSEQ"
    }, {
      "field" : null,
      "miriamType" : "UNIPROT"
    }, {
      "field" : "SYMBOL",
      "miriamType" : null
    }, {
      "field" : "PREVIOUS_SYMBOLS",
      "miriamType" : null
    }, {
      "field" : "SYNONYMS",
      "miriamType" : null
    }, {
      "field" : "NAME",
      "miriamType" : null
    }, {
      "field" : "FULL_NAME",
      "miriamType" : null
    } ],
    "options" : [ ]
  }, {
    "order" : 0,
    "targets" : [ "CHEMICAL" ],
    "annotator" : "CHEBI",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : null,
      "miriamType" : "CHEBI"
    }, {
      "order" : 1,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ {
      "field" : "FULL_NAME",
      "miriamType" : null
    }, {
      "field" : null,
      "miriamType" : "INCHI"
    }, {
      "field" : null,
      "miriamType" : "INCHIKEY"
    }, {
      "field" : null,
      "miriamType" : "STITCH"
    }, {
      "field" : "SMILES",
      "miriamType" : null
    }, {
      "field" : "SYNONYMS",
      "miriamType" : null
    } ],
    "options" : [ ]
  }, {
    "order" : 1,
    "targets" : [ "CHEMICAL" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ ],
    "options" : [ ]
  }, {
    "order" : 0,
    "targets" : [ "COMPARTMENT" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ ],
    "options" : [ ]
  }, {
    "order" : 1,
    "targets" : [ "COMPARTMENT" ],
    "annotator" : "GO",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : null,
      "miriamType" : "GO"
    } ],
    "annotationsToProvide" : [ {
      "field" : "FULL_NAME",
      "miriamType" : null
    }, {
      "field" : "DESCRIPTION",
      "miriamType" : null
    } ],
    "options" : [ ]
  }, {
    "order" : 0,
    "targets" : [ "OTHER" ],
    "annotator" : "COPY_CELL_DESIGNER_ANNOTATIONS",
    "sourceInformation" : [ {
      "order" : 0,
      "field" : "NAME",
      "miriamType" : null
    } ],
    "annotationsToProvide" : [ ],
    "options" : [ ]
  } ]
}

3.5. Delete annotator preset

Removes a preset permanently. Projects already annotated with it are not affected.

3.5.1. HTTP request

DELETE /minerva/new_api/annotator_presets/3 HTTP/1.1

3.5.2. Path Parameters

Table 2. /minerva/new_api/annotator_presets/{id}
Parameter Description

id

preset identifier

3.5.3. CURL sample

$ curl 'https://minerva-dev.lcsb.uni.lu/minerva/new_api/annotator_presets/3' -X DELETE \
    -H 'Authorization: Bearer xxxxxxxx'

3.5.4. HTTP response

HTTP/1.1 200 OK